PDB: 1m3y Compound: the major capsid protein of pbcv-1, vp54 Classification: VIRUS/VIRAL PROTEIN Entry date in PDB: 2002-12-04 Resolution [Å]: 2.00 R-Factor: 0.342

CHAIN: A SWISS-PROT/TREMBL: P30328    KEYWORD: 3D-structure    Coat protein    Glycoprotein    Late protein    SCOP: b.121.2.3 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group II dsDNA viruses VP    Major capsid protein vp54    Major capsid protein vp54    Paramecium bursaria chorella virus type 1, PBCV-1 SCOP: b.121.2.3 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group II dsDNA viruses VP    Major capsid protein vp54    Major capsid protein vp54    Paramecium bursaria chorella virus type 1, PBCV-1 GO:  viral capsid    structural molecule activity    CHAIN: B SWISS-PROT/TREMBL: P30328    KEYWORD: 3D-structure    Coat protein    Glycoprotein    Late protein    SCOP: b.121.2.3 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group II dsDNA viruses VP    Major capsid protein vp54    Major capsid protein vp54    Paramecium bursaria chorella virus type 1, PBCV-1 SCOP: b.121.2.3 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group II dsDNA viruses VP    Major capsid protein vp54    Major capsid protein vp54    Paramecium bursaria chorella virus type 1, PBCV-1 GO:  viral capsid    structural molecule activity    CHAIN: C SWISS-PROT/TREMBL: P30328    KEYWORD: 3D-structure    Coat protein    Glycoprotein    Late protein    SCOP: b.121.2.3 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group II dsDNA viruses VP    Major capsid protein vp54    Major capsid protein vp54    Paramecium bursaria chorella virus type 1, PBCV-1 SCOP: b.121.2.3 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group II dsDNA viruses VP    Major capsid protein vp54    Major capsid protein vp54    Paramecium bursaria chorella virus type 1, PBCV-1 GO:  viral capsid    structural molecule activity    CHAIN: D SWISS-PROT/TREMBL: P30328    KEYWORD: 3D-structure    Coat protein    Glycoprotein    Late protein    SCOP: b.121.2.3 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group II dsDNA viruses VP    Major capsid protein vp54    Major capsid protein vp54    Paramecium bursaria chorella virus type 1, PBCV-1 SCOP: b.121.2.3 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group II dsDNA viruses VP    Major capsid protein vp54    Major capsid protein vp54    Paramecium bursaria chorella virus type 1, PBCV-1 GO:  viral capsid    structural molecule activity

Image Source: PDB

Loops in ArchDB40 clusters

1m3y_A_213 - HE => SUBCLASS : 0.1.11
1m3y_A_188 - HA => SUBCLASS : 2.3.1
1m3y_A_103 - EH => SUBCLASS : 0.1.2
1m3y_A_201 - EH => SUBCLASS : 1.1.4
1m3y_A_323 - AR => SUBCLASS : 4.21.1
1m3y_A_369 - AR => SUBCLASS : 5.12.1

Loops in ArchDB95 clusters

1m3y_A_103 - EH => SUBCLASS : 0.1.1
1m3y_A_385 - EH => SUBCLASS : 4.1.1
1m3y_A_248 - AR => SUBCLASS : 1.3.3
1m3y_A_323 - AR => SUBCLASS : 4.15.2
1m3y_A_369 - AR => SUBCLASS : 5.5.2
1m3y_A_110 - HH => SUBCLASS : 2.4.10
1m3y_A_213 - HE => SUBCLASS : 0.1.9
1m3y_A_213 - HE => SUBCLASS : 1.3.2
1m3y_A_188 - HA => SUBCLASS : 2.3.1

Loops not clustered in ArchDB

1m3y_A_37 - AR
1m3y_A_403 - AR
1m3y_A_377 - AR
1m3y_A_351 - AR
1m3y_A_258 - AR
1m3y_A_235 - AR
1m3y_A_224 - AR
1m3y_A_192 - AR
1m3y_A_173 - AR
1m3y_A_163 - AR
1m3y_A_144 - AR
1m3y_A_55 - AR
1m3y_A_329 - EH
1m3y_A_66 - EH
1m3y_A_413 - HA
1m3y_A_92 - HA
1m3y_A_313 - HA
1m3y_A_88 - HE
1m3y_A_123 - HE
1m3y_A_337 - HE
1m3y_A_393 - HE
1m3y_A_331 - HH

1j5q A - percentage of sequence identity: 100
1j5q B - percentage of sequence identity: 100
1m3y A - percentage of sequence identity: 100
1m3y B - percentage of sequence identity: 100
1m3y C - percentage of sequence identity: 100
1m3y D - percentage of sequence identity: 100
1m4x A - percentage of sequence identity: 99
1m4x B - percentage of sequence identity: 99
1m4x C - percentage of sequence identity: 99