PDB: 1ma1 Compound: superoxide dismutase Classification: OXIDOREDUCTASE Entry date in PDB: 2002-08-21 Resolution [Å]: 2.60 R-Factor: 0.215

CHAIN: A SWISS-PROT/TREMBL: P18868    KEYWORD: 3D-structure    Complete proteome    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: B SWISS-PROT/TREMBL: P18868    KEYWORD: 3D-structure    Complete proteome    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: C SWISS-PROT/TREMBL: P18868    KEYWORD: 3D-structure    Complete proteome    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: D SWISS-PROT/TREMBL: P18868    KEYWORD: 3D-structure    Complete proteome    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: E SWISS-PROT/TREMBL: P18868    KEYWORD: 3D-structure    Complete proteome    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: F SWISS-PROT/TREMBL: P18868    KEYWORD: 3D-structure    Complete proteome    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Methanobacterium thermoautotrophicum GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism

Image Source: PDB

Loops in ArchDB-EC clusters

1ma1_A_36 - HH => SUBCLASS : 5.1.2

Loops not clustered in ArchDB

1ma1_A_142 - AR
1ma1_A_163 - EH
1ma1_A_130 - HA
1ma1_A_112 - HE
1ma1_A_26 - HH
1ma1_A_63 - HH
1ma1_A_99 - HH
1ma1_A_173 - HH
1ma1_A_180 - HH

1ma1 A - percentage of sequence identity: 100
1ma1 B - percentage of sequence identity: 100
1ma1 C - percentage of sequence identity: 100
1ma1 D - percentage of sequence identity: 100
1ma1 E - percentage of sequence identity: 100
1ma1 F - percentage of sequence identity: 100