PDB: 1mnm Compound: mcm1 transcriptional regulator Classification: COMPLEX (TRANSCRIPTION/HOMEOBOX/DNA) Entry date in PDB: 1998-03-18 Resolution [Å]: 2.25 R-Factor: 0.240

CHAIN: A SWISS-PROT/TREMBL: P11746    KEYWORD: 3D-structure    DNA-binding    Nuclear protein    Transcription regulation    SCOP: d.88.1.1 Alpha and beta proteins (a+b)    SRF-like    SRF-like    SRF-like    MCM1 transcriptional regulator    Baker's yeast (Saccharomyces cerevisiae) GO:  nucleus    transcription factor activity    regulation of transcription, DNA-dependent    CHAIN: B SWISS-PROT/TREMBL: P11746    KEYWORD: 3D-structure    DNA-binding    Nuclear protein    Transcription regulation    SCOP: d.88.1.1 Alpha and beta proteins (a+b)    SRF-like    SRF-like    SRF-like    MCM1 transcriptional regulator    Baker's yeast (Saccharomyces cerevisiae) GO:  nucleus    transcription factor activity    regulation of transcription, DNA-dependent    CHAIN: C SWISS-PROT/TREMBL: P01367    KEYWORD: 3D-structure    DNA-binding    Homeobox    Nuclear protein    Repressor    Transcription regulation    SCOP: a.4.1.1 All alpha proteins    DNA/RNA-binding 3-helical bundle    Homeodomain-like    Homeodomain    mat alpha2 Homeodomain    Baker's yeast (Saccharomyces cerevisiae) GO:  nucleus    DNA binding    transcription factor activity    regulation of transcription, DNA-dependent    CHAIN: D SWISS-PROT/TREMBL: P01367    KEYWORD: 3D-structure    DNA-binding    Homeobox    Nuclear protein    Repressor    Transcription regulation    SCOP: a.4.1.1 All alpha proteins    DNA/RNA-binding 3-helical bundle    Homeodomain-like    Homeodomain    mat alpha2 Homeodomain    Baker's yeast (Saccharomyces cerevisiae) GO:  nucleus    DNA binding    transcription factor activity    regulation of transcription, DNA-dependent

Image Source: PDB

Loops in ArchDB40 clusters

1mnm_A_59 - HA => SUBCLASS : 3.1.1
1mnm_A_79 - HH => SUBCLASS : 1.1.48

Loops in ArchDB95 clusters

1mnm_A_79 - HH => SUBCLASS : 1.1.10
1mnm_C_138 - HH => SUBCLASS : 5.42.1
1mnm_A_29 - HE => SUBCLASS : 5.10.1
1mnm_A_59 - HA => SUBCLASS : 3.1.1
1mnm_C_117 - HA => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1mnm_A_69 - EH
1mnm_C_125 - EH
1mnm_C_159 - HH

1hbx A - percentage of sequence identity: 64
1hbx B - percentage of sequence identity: 64
1hbx D - percentage of sequence identity: 64
1hbx E - percentage of sequence identity: 64
1k61 A - percentage of sequence identity: 100
1k6o B - percentage of sequence identity: 64
1k6o C - percentage of sequence identity: 64
1mnm A - percentage of sequence identity: 100
1mnm B - percentage of sequence identity: 100
1srs A - percentage of sequence identity: 64
1srs B - percentage of sequence identity: 64