PDB: 1npy Compound: hypothetical shikimate 5-dehydrogenase-like protei Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION Entry date in PDB: 2003-07-29 Resolution [Å]: 1.75 R-Factor: 0.181

CHAIN: A SWISS-PROT/TREMBL: P44774    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Oxidoreductase    SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Shikimate 5-dehydrogenase-like protein HI0607    Haemophilus influenzae SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Shikimate 5-dehydrogenase-like protein HI0607    Haemophilus influenzae GO:  cytoplasm    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway    CHAIN: B SWISS-PROT/TREMBL: P44774    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Oxidoreductase    SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Shikimate 5-dehydrogenase-like protein HI0607    Haemophilus influenzae SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Shikimate 5-dehydrogenase-like protein HI0607    Haemophilus influenzae GO:  cytoplasm    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway    CHAIN: C SWISS-PROT/TREMBL: P44774    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Oxidoreductase    SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Shikimate 5-dehydrogenase-like protein HI0607    Haemophilus influenzae SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Shikimate 5-dehydrogenase-like protein HI0607    Haemophilus influenzae GO:  cytoplasm    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway    CHAIN: D SWISS-PROT/TREMBL: P44774    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Oxidoreductase    SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Shikimate 5-dehydrogenase-like protein HI0607    Haemophilus influenzae SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Shikimate 5-dehydrogenase-like protein HI0607    Haemophilus influenzae GO:  cytoplasm    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway

Image Source: PDB

Loops in ArchDB40 clusters

1npy_A_231 - EH => SUBCLASS : 1.1.3
1npy_A_76 - EH => SUBCLASS : 1.1.14
1npy_A_231 - EH => SUBCLASS : 1.1.15
1npy_A_96 - EH => SUBCLASS : 1.1.48
1npy_A_146 - EH => SUBCLASS : 2.1.5
1npy_A_7 - EH => SUBCLASS : 4.11.6
1npy_A_235 - HH => SUBCLASS : 5.1.1

Loops in ArchDB95 clusters

1npy_A_96 - EH => SUBCLASS : 0.1.73
1npy_A_96 - EH => SUBCLASS : 1.1.2
1npy_A_231 - EH => SUBCLASS : 1.1.7
1npy_A_76 - EH => SUBCLASS : 1.1.8
1npy_A_146 - EH => SUBCLASS : 2.1.7
1npy_A_235 - HH => SUBCLASS : 5.1.1
1npy_A_153 - HE => SUBCLASS : 1.1.1
1npy_A_153 - HE => SUBCLASS : 1.2.2
1npy_A_153 - HE => SUBCLASS : 1.2.3
1npy_A_19 - HE => SUBCLASS : 2.1.1
1npy_A_220 - HE => SUBCLASS : 2.1.1
1npy_A_200 - HE => SUBCLASS : 2.2.1
1npy_A_45 - HE => SUBCLASS : 3.1.1
1npy_A_131 - HE => SUBCLASS : 3.1.3

Loops not clustered in ArchDB

1npy_A_59 - AR
1npy_A_166 - AR
1npy_A_35 - EH
1npy_A_122 - EH
1npy_A_178 - EH
1npy_A_208 - EH
1npy_A_89 - HA
1npy_A_79 - HE
1npy_A_102 - HE

1npy A - percentage of sequence identity: 100
1npy B - percentage of sequence identity: 100
1npy C - percentage of sequence identity: 100
1npy D - percentage of sequence identity: 100