PDB: 1nvm Compound: 4-hydroxy-2-oxovalerate aldolase Classification: LYASE/OXIDOREDUCTASE Entry date in PDB: 2003-06-17 Resolution [Å]: 1.70 R-Factor: 0.189

CHAIN: A SWISS-PROT/TREMBL: P51016    KEYWORD: 3D-structure    Aromatic hydrocarbons catabolism    Lyase    Plasmid    EC: 4.1.3.- SCOP: a.5.7.1 All alpha proteins    RuvA C-terminal domain-like    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    Pseudomonas sp. SCOP: c.1.10.5 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain    4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain    Pseudomonas sp. GO:  catalytic activity    CHAIN: C SWISS-PROT/TREMBL: P51016    KEYWORD: 3D-structure    Aromatic hydrocarbons catabolism    Lyase    Plasmid    EC: 4.1.3.- SCOP: a.5.7.1 All alpha proteins    RuvA C-terminal domain-like    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    Pseudomonas sp. SCOP: c.1.10.5 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain    4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain    Pseudomonas sp. GO:  catalytic activity    CHAIN: E SWISS-PROT/TREMBL: P51016    KEYWORD: 3D-structure    Aromatic hydrocarbons catabolism    Lyase    Plasmid    EC: 4.1.3.- SCOP: a.5.7.1 All alpha proteins    RuvA C-terminal domain-like    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    Pseudomonas sp. SCOP: c.1.10.5 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain    4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain    Pseudomonas sp. GO:  catalytic activity    CHAIN: G SWISS-PROT/TREMBL: P51016    KEYWORD: 3D-structure    Aromatic hydrocarbons catabolism    Lyase    Plasmid    EC: 4.1.3.- SCOP: a.5.7.1 All alpha proteins    RuvA C-terminal domain-like    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    4-hydroxy-2-oxovalerate aldolase DmpG, communication domain    Pseudomonas sp. SCOP: c.1.10.5 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain    4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain    Pseudomonas sp. GO:  catalytic activity

Image Source: PDB

Loops in ArchDB40 clusters

1nvm_A_123 - HE => SUBCLASS : 2.1.1
1nvm_B_43 - HE => SUBCLASS : 2.1.1
1nvm_A_96 - HE => SUBCLASS : 3.1.1
1nvm_A_148 - HE => SUBCLASS : 3.1.1
1nvm_B_14 - HE => SUBCLASS : 3.3.6
1nvm_A_29 - HE => SUBCLASS : 3.6.1
1nvm_A_208 - HE => SUBCLASS : 3.6.1
1nvm_B_172 - HE => SUBCLASS : 3.6.2
1nvm_B_81 - HE => SUBCLASS : 4.1.1
1nvm_A_69 - HE => SUBCLASS : 4.1.1
1nvm_B_220 - HE => SUBCLASS : 4.1.4
1nvm_A_177 - HE => SUBCLASS : 5.11.1
1nvm_B_59 - HE => SUBCLASS : 7.2.1
1nvm_B_258 - HA => SUBCLASS : 3.6.1
1nvm_B_5 - EH => SUBCLASS : 3.2.1
1nvm_B_150 - EH => SUBCLASS : 5.2.1
1nvm_B_150 - EH => SUBCLASS : 5.20.1
1nvm_A_135 - EH => SUBCLASS : 7.1.1
1nvm_A_135 - EH => SUBCLASS : 7.1.2
1nvm_B_241 - AR => SUBCLASS : 3.2.2
1nvm_B_248 - AR => SUBCLASS : 3.7.3
1nvm_B_248 - AR => SUBCLASS : 4.3.1
1nvm_B_248 - AR => SUBCLASS : 5.33.1
1nvm_A_294 - HH => SUBCLASS : 3.1.1
1nvm_A_280 - HH => SUBCLASS : 3.3.3
1nvm_A_280 - HH => SUBCLASS : 3.3.6

Loops in ArchDB95 clusters

1nvm_B_55 - EH => SUBCLASS : 0.1.65
1nvm_B_5 - EH => SUBCLASS : 3.5.1
1nvm_B_72 - EH => SUBCLASS : 3.9.4
1nvm_B_150 - EH => SUBCLASS : 5.2.2
1nvm_A_135 - EH => SUBCLASS : 7.1.2
1nvm_B_248 - AR => SUBCLASS : 2.2.1
1nvm_B_241 - AR => SUBCLASS : 3.1.3
1nvm_A_294 - HH => SUBCLASS : 3.1.1
1nvm_A_280 - HH => SUBCLASS : 3.1.1
1nvm_A_280 - HH => SUBCLASS : 3.13.1
1nvm_B_43 - HE => SUBCLASS : 2.1.1
1nvm_A_123 - HE => SUBCLASS : 2.1.1
1nvm_A_148 - HE => SUBCLASS : 3.1.1
1nvm_B_172 - HE => SUBCLASS : 3.1.1
1nvm_A_208 - HE => SUBCLASS : 3.1.1
1nvm_A_29 - HE => SUBCLASS : 3.1.1
1nvm_A_96 - HE => SUBCLASS : 3.1.1
1nvm_B_14 - HE => SUBCLASS : 3.4.5
1nvm_B_220 - HE => SUBCLASS : 3.4.7
1nvm_B_81 - HE => SUBCLASS : 4.1.1
1nvm_A_177 - HE => SUBCLASS : 5.1.1
1nvm_B_59 - HE => SUBCLASS : 7.2.1
1nvm_B_258 - HA => SUBCLASS : 3.8.1

Loops in ArchDB-EC clusters

1nvm_A_280 - HH => SUBCLASS : 3.3.2

Loops not clustered in ArchDB

1nvm_B_264 - AR
1nvm_B_192 - AR
1nvm_A_10 - EH
1nvm_B_99 - EH
1nvm_B_30 - EH
1nvm_B_207 - EH
1nvm_B_268 - EH
1nvm_B_126 - EH
1nvm_A_222 - EH
1nvm_A_196 - EH
1nvm_A_165 - EH
1nvm_A_109 - EH
1nvm_A_84 - EH
1nvm_A_46 - EH
1nvm_B_132 - HE
1nvm_B_114 - HE
1nvm_A_309 - HH
1nvm_A_257 - HH
1nvm_A_239 - HH
1nvm_A_18 - HH
1nvm_B_166 - HH

1nvm A - percentage of sequence identity: 100
1nvm C - percentage of sequence identity: 100
1nvm E - percentage of sequence identity: 100
1nvm G - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0