PDB: 1nwz Compound: photoactive yellow protein Classification: SIGNALING PROTEIN Entry date in PDB: 2003-03-11 Resolution [Å]: 0.82 R-Factor: 0.123

CHAIN: A SWISS-PROT/TREMBL: P16113    KEYWORD: 3D-structure    Chromophore    Photoreceptor    SCOP: d.110.3.1 Alpha and beta proteins (a+b)    Profilin-like    PYP-like sensor domain (PAS domain)    PYP-like    Photoactive yellow protein, PYP    Ectothiorhodospira halophila GO:  signal transducer activity    signal transduction

Image Source: PDB

Loops in ArchDB40 clusters

1nwz_A_20 - HE => SUBCLASS : 2.3.9
1nwz_A_29 - HA => SUBCLASS : 4.2.1
1nwz_A_39 - EH => SUBCLASS : 1.1.8
1nwz_A_11 - HH => SUBCLASS : 4.12.1

Loops in ArchDB95 clusters

1nwz_A_39 - EH => SUBCLASS : 1.1.7
1nwz_A_39 - EH => SUBCLASS : 1.1.14
1nwz_A_11 - HH => SUBCLASS : 4.9.3
1nwz_A_20 - HE => SUBCLASS : 2.3.7
1nwz_A_29 - HA => SUBCLASS : 3.1.2

Loops not clustered in ArchDB

1nwz_A_89 - HA
1nwz_A_103 - HA
1nwz_A_76 - HE
1nwz_A_44 - HH
1nwz_A_54 - HH

1d7e A - percentage of sequence identity: 100
1f98 A - percentage of sequence identity: 99
1f9i A - percentage of sequence identity: 99
1gsv A - percentage of sequence identity: 99
1gsw A - percentage of sequence identity: 99
1gsx A - percentage of sequence identity: 98
1kou A - percentage of sequence identity: 100
1odv B - percentage of sequence identity: 100
1ot6 A - percentage of sequence identity: 99
1ot9 A - percentage of sequence identity: 100
1ota A - percentage of sequence identity: 99
1otb A - percentage of sequence identity: 100
1otd B - percentage of sequence identity: 95
1ote A - percentage of sequence identity: 99
1oti A - percentage of sequence identity: 99
1s1y A - percentage of sequence identity: 99
1s1z A - percentage of sequence identity: 99
1s4r A - percentage of sequence identity: 100
1s4s A - percentage of sequence identity: 100
1t18 A - percentage of sequence identity: 99
1t19 A - percentage of sequence identity: 99
1t1a A - percentage of sequence identity: 99
1t1b A - percentage of sequence identity: 99
1t1c A - percentage of sequence identity: 99
1ts0 A - percentage of sequence identity: 100
1ts6 A - percentage of sequence identity: 100
1ts7 A - percentage of sequence identity: 100
1ts8 A - percentage of sequence identity: 100
1ugu A - percentage of sequence identity: 99
1uwn X - percentage of sequence identity: 100
1xfn A - percentage of sequence identity: 99
1xfq A - percentage of sequence identity: 99
2phy - - percentage of sequence identity: 100
2pyp - - percentage of sequence identity: 100
2pyr - - percentage of sequence identity: 100
3phy - - percentage of sequence identity: 100
3pyp - - percentage of sequence identity: 100