PDB: 1ny1 Compound: probable polysaccharide deacetylase pdaa Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION Entry date in PDB: 2003-03-18 Resolution [Å]: 1.80 R-Factor: 0.182

CHAIN: A SWISS-PROT/TREMBL: O34928    KEYWORD: 3D-structure    Complete proteome    Hydrolase    Signal    Sporulation    3D-structure    Complete proteome    Hydrolase    Signal    Sporulation    EC: 3.-.-.- SCOP: c.6.2.3 Alpha and beta proteins (a/b)    7-stranded beta/alpha barrel    Glycoside hydrolase/deacetylase    NodB-like polysaccharide deacetylase    Probable polysaccharide deacetylase PdaA    Bacillus subtilis GO:  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds    carbohydrate metabolism    CHAIN: B SWISS-PROT/TREMBL: O34928    KEYWORD: 3D-structure    Complete proteome    Hydrolase    Signal    Sporulation    3D-structure    Complete proteome    Hydrolase    Signal    Sporulation    EC: 3.-.-.- SCOP: c.6.2.3 Alpha and beta proteins (a/b)    7-stranded beta/alpha barrel    Glycoside hydrolase/deacetylase    NodB-like polysaccharide deacetylase    Probable polysaccharide deacetylase PdaA    Bacillus subtilis GO:  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds    carbohydrate metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1ny1_A_168 - EH => SUBCLASS : 1.1.1

Loops in ArchDB95 clusters

1ny1_A_168 - EH => SUBCLASS : 1.1.1
1ny1_A_171 - HE => SUBCLASS : 1.1.1
1ny1_A_228 - HE => SUBCLASS : 1.2.2
1ny1_A_228 - HE => SUBCLASS : 2.5.2
1ny1_A_81 - HE => SUBCLASS : 3.2.4
1ny1_A_81 - HE => SUBCLASS : 3.5.1
1ny1_A_136 - HE => SUBCLASS : 6.55.1

Loops in ArchDB-EC clusters

1ny1_A_81 - HE => SUBCLASS : 3.5.1

Loops not clustered in ArchDB

1ny1_A_161 - AR
1ny1_A_161 - AR
1ny1_A_29 - EH
1ny1_A_217 - EH
1ny1_A_183 - EH
1ny1_A_120 - EH
1ny1_A_96 - EH
1ny1_A_67 - EH
1ny1_A_108 - HE
1ny1_A_202 - HE
1ny1_A_46 - HE
1ny1_A_101 - HH

1ny1 A - percentage of sequence identity: 100
1ny1 B - percentage of sequence identity: 100
1w17 A - percentage of sequence identity: 100
1w17 B - percentage of sequence identity: 100
1w1a 1 - percentage of sequence identity: 100
1w1a 2 - percentage of sequence identity: 100
1w1b 1 - percentage of sequence identity: 100
1w1b 2 - percentage of sequence identity: 100