PDB: 1oqe Compound: tumor necrosis factor ligand superfamily member 13 Classification: IMMUNE SYSTEM Entry date in PDB: 2003-05-13 Resolution [Å]: 2.50 R-Factor: 0.244

CHAIN: A SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: B SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: C SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: D SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: E SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: F SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: G SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: H SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: I SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: J SWISS-PROT/TREMBL: Q9Y275    KEYWORD: 3D-structure    Cytokine    Glycoprotein    Polymorphism    Signal-anchor    Transmembrane    SCOP: b.22.1.1 All beta proteins    TNF-like    TNF-like    TNF-like    Soluble part of TALL-1, sTALL-1 (BAFF)    Human (Homo sapiens) GO:  membrane    tumor necrosis factor receptor binding    immune response    CHAIN: K SWISS-PROT/TREMBL: Q96RJ3    KEYWORD: 3D-structure    Alternative splicing    Immune response    Receptor    Signal-anchor    Transmembrane    SCOP: g.24.1.2 Small proteins    TNF receptor-like    TNF receptor-like    BAFF receptor-like    Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3    Human (Homo sapiens) GO:   CHAIN: L SWISS-PROT/TREMBL: Q96RJ3    KEYWORD: 3D-structure    Alternative splicing    Immune response    Receptor    Signal-anchor    Transmembrane    SCOP: g.24.1.2 Small proteins    TNF receptor-like    TNF receptor-like    BAFF receptor-like    Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3    Human (Homo sapiens) GO:   CHAIN: M SWISS-PROT/TREMBL: Q96RJ3    KEYWORD: 3D-structure    Alternative splicing    Immune response    Receptor    Signal-anchor    Transmembrane    SCOP: g.24.1.2 Small proteins    TNF receptor-like    TNF receptor-like    BAFF receptor-like    Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3    Human (Homo sapiens) GO:   CHAIN: N SWISS-PROT/TREMBL: Q96RJ3    KEYWORD: 3D-structure    Alternative splicing    Immune response    Receptor    Signal-anchor    Transmembrane    SCOP: g.24.1.2 Small proteins    TNF receptor-like    TNF receptor-like    BAFF receptor-like    Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3    Human (Homo sapiens) GO:   CHAIN: O SWISS-PROT/TREMBL: Q96RJ3    KEYWORD: 3D-structure    Alternative splicing    Immune response    Receptor    Signal-anchor    Transmembrane    SCOP: g.24.1.2 Small proteins    TNF receptor-like    TNF receptor-like    BAFF receptor-like    Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3    Human (Homo sapiens) GO:   CHAIN: P SWISS-PROT/TREMBL: Q96RJ3    KEYWORD: 3D-structure    Alternative splicing    Immune response    Receptor    Signal-anchor    Transmembrane    SCOP: g.24.1.2 Small proteins    TNF receptor-like    TNF receptor-like    BAFF receptor-like    Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3    Human (Homo sapiens) GO:   CHAIN: Q SWISS-PROT/TREMBL: Q96RJ3    KEYWORD: 3D-structure    Alternative splicing    Immune response    Receptor    Signal-anchor    Transmembrane    SCOP: g.24.1.2 Small proteins    TNF receptor-like    TNF receptor-like    BAFF receptor-like    Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3    Human (Homo sapiens) GO:   CHAIN: R SWISS-PROT/TREMBL: Q96RJ3    KEYWORD: 3D-structure    Alternative splicing    Immune response    Receptor    Signal-anchor    Transmembrane    SCOP: g.24.1.2 Small proteins    TNF receptor-like    TNF receptor-like    BAFF receptor-like    Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3    Human (Homo sapiens) GO:

Image Source: PDB

Loops in ArchDB40 clusters

1oqe_K_8 - HA => SUBCLASS : 4.1.1

Loops in ArchDB95 clusters

1oqe_N_8 - HA => SUBCLASS : 4.1.2
1oqe_N_8 - HA => SUBCLASS : 4.1.4

1kxg A - percentage of sequence identity: 100
1oqe K - percentage of sequence identity: 100
1oqe L - percentage of sequence identity: 100
1oqe M - percentage of sequence identity: 100
1oqe N - percentage of sequence identity: 100
1oqe O - percentage of sequence identity: 100
1oqe P - percentage of sequence identity: 100
1oqe Q - percentage of sequence identity: 100
1oqe R - percentage of sequence identity: 100
1osx A - percentage of sequence identity: 100
1p0t 0 - percentage of sequence identity: 100
1p0t 1 - percentage of sequence identity: 100
1p0t 2 - percentage of sequence identity: 100
1p0t 3 - percentage of sequence identity: 100
1p0t 4 - percentage of sequence identity: 100
1p0t 5 - percentage of sequence identity: 100
1p0t 6 - percentage of sequence identity: 100
1p0t 7 - percentage of sequence identity: 100
1p0t 8 - percentage of sequence identity: 100
1p0t 9 - percentage of sequence identity: 100
1p0t B - percentage of sequence identity: 100
1p0t D - percentage of sequence identity: 100
1p0t E - percentage of sequence identity: 100
1p0t F - percentage of sequence identity: 100
1p0t H - percentage of sequence identity: 100
1p0t I - percentage of sequence identity: 100
1p0t J - percentage of sequence identity: 100
1p0t K - percentage of sequence identity: 100
1p0t L - percentage of sequence identity: 100
1p0t M - percentage of sequence identity: 100
1p0t N - percentage of sequence identity: 100
1p0t O - percentage of sequence identity: 100
1p0t P - percentage of sequence identity: 100
1p0t R - percentage of sequence identity: 100
1p0t S - percentage of sequence identity: 100
1p0t Y - percentage of sequence identity: 100
1p0t Z - percentage of sequence identity: 100
1p0t a - percentage of sequence identity: 100
1p0t c - percentage of sequence identity: 100
1p0t g - percentage of sequence identity: 100
1p0t q - percentage of sequence identity: 100
1p0t t - percentage of sequence identity: 100
1p0t u - percentage of sequence identity: 100
1p0t v - percentage of sequence identity: 100
1p0t w - percentage of sequence identity: 100
1p0t x - percentage of sequence identity: 100