PDB: 1p27 Compound: mago nashi protein homolog Classification: RNA BINDING PROTEIN Entry date in PDB: 2003-08-19 Resolution [Å]: 2.00 R-Factor: 0.222

CHAIN: A SWISS-PROT/TREMBL: P61326    KEYWORD: 3D-structure    Nuclear protein    SCOP: d.232.1.1 Alpha and beta proteins (a+b)    Mago nashi protein    Mago nashi protein    Mago nashi protein    Mago nashi protein    Human (Homo sapiens) GO:  nucleus    sex determination    CHAIN: B SWISS-PROT/TREMBL: Q9Y5S9    KEYWORD: 3D-structure    Alternative splicing    mRNA splicing    mRNA transport    Nuclear protein    RNA-binding    Transport    SCOP: d.58.7.1 Alpha and beta proteins (a+b)    Ferredoxin-like    RNA-binding domain, RBD    Canonical RBD    RNA-binding protein 8    Human (Homo sapiens) GO:  cytoplasm    nucleus    nucleic acid binding    nucleotide binding    RNA binding    RNA processing    CHAIN: C SWISS-PROT/TREMBL: P61326    KEYWORD: 3D-structure    Nuclear protein    SCOP: d.232.1.1 Alpha and beta proteins (a+b)    Mago nashi protein    Mago nashi protein    Mago nashi protein    Mago nashi protein    Human (Homo sapiens) GO:  nucleus    sex determination    CHAIN: D SWISS-PROT/TREMBL: Q9Y5S9    KEYWORD: 3D-structure    Alternative splicing    mRNA splicing    mRNA transport    Nuclear protein    RNA-binding    Transport    SCOP: d.58.7.1 Alpha and beta proteins (a+b)    Ferredoxin-like    RNA-binding domain, RBD    Canonical RBD    RNA-binding protein 8    Human (Homo sapiens) GO:  cytoplasm    nucleus    nucleic acid binding    nucleotide binding    RNA binding    RNA processing

Image Source: PDB

Loops in ArchDB95 clusters

1p27_A_44 - EH => SUBCLASS : 1.1.5
1p27_B_113 - EH => SUBCLASS : 2.1.1
1p27_A_44 - EH => SUBCLASS : 2.2.1
1p27_B_73 - EH => SUBCLASS : 7.5.1
1p27_B_99 - HA => SUBCLASS : 6.2.2

Loops not clustered in ArchDB

1p27_A_95 - EH
1p27_A_5 - HA
1p27_A_18 - HA
1p27_A_31 - HA
1p27_A_85 - HA
1p27_A_54 - HE
1p27_B_86 - HE
1p27_B_124 - HE
1p27_A_107 - HH

1hl6 B - percentage of sequence identity: 91
1hl6 D - percentage of sequence identity: 91
1oo0 A - percentage of sequence identity: 91
1oo0 B - percentage of sequence identity: 69
1p27 A - percentage of sequence identity: 100
1p27 C - percentage of sequence identity: 100
1rk8 B - percentage of sequence identity: 91