PDB: 1qmy Compound: protease Classification: HYDROLASE Entry date in PDB: 2000-10-12 Resolution [Å]: 1.90 R-Factor: 0.190

CHAIN: A SWISS-PROT/TREMBL: P03305    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Nonstructural protein    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: d.3.1.2 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    FMDV leader protease    FMDV leader protease    Foot-and-mouth disease virus GO:  viral capsid    ATP binding    cysteine-type endopeptidase activity    helicase activity    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral life cycle    viral protein processing    CHAIN: B SWISS-PROT/TREMBL: P03305    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Nonstructural protein    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: d.3.1.2 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    FMDV leader protease    FMDV leader protease    Foot-and-mouth disease virus GO:  viral capsid    ATP binding    cysteine-type endopeptidase activity    helicase activity    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral life cycle    viral protein processing    CHAIN: C SWISS-PROT/TREMBL: P03305    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Nonstructural protein    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: d.3.1.2 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    FMDV leader protease    FMDV leader protease    Foot-and-mouth disease virus GO:  viral capsid    ATP binding    cysteine-type endopeptidase activity    helicase activity    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral life cycle    viral protein processing

Image Source: PDB

Loops in ArchDB40 clusters

1qmy_A_160 - HA => SUBCLASS : 2.3.1
1qmy_A_30 - HA => SUBCLASS : 3.1.1
1qmy_A_137 - HA => SUBCLASS : 3.5.1
1qmy_A_137 - HA => SUBCLASS : 3.12.1
1qmy_A_148 - HA => SUBCLASS : 6.7.1

Loops in ArchDB95 clusters

1qmy_A_148 - HA => SUBCLASS : 2.2.2
1qmy_A_160 - HA => SUBCLASS : 2.3.1
1qmy_A_30 - HA => SUBCLASS : 3.1.1
1qmy_A_137 - HA => SUBCLASS : 3.4.1

Loops in ArchDB-EC clusters

1qmy_A_148 - HA => SUBCLASS : 6.7.1

Loops not clustered in ArchDB

1qmy_A_166 - AR
1qmy_A_124 - AR
1qmy_A_166 - AR
1qmy_A_124 - AR
1qmy_A_38 - EH
1qmy_A_160 - HA
1qmy_A_148 - HA
1qmy_A_137 - HA
1qmy_A_115 - HA
1qmy_A_30 - HA
1qmy_A_115 - HA
1qmy_A_100 - HE
1qmy_A_51 - HH
1qmy_A_69 - HH
1qmy_A_79 - HH

1qmy A - percentage of sequence identity: 100
1qmy B - percentage of sequence identity: 100
1qmy C - percentage of sequence identity: 100
1qol A - percentage of sequence identity: 99
1qol B - percentage of sequence identity: 99
1qol C - percentage of sequence identity: 99
1qol D - percentage of sequence identity: 99
1qol E - percentage of sequence identity: 99
1qol F - percentage of sequence identity: 99
1qol G - percentage of sequence identity: 99
1qol H - percentage of sequence identity: 99