PDB: 1rpn Compound: gdp-mannose 4,6-dehydratase Classification: LYASE Entry date in PDB: 2004-02-24 Resolution [Å]: 2.15 R-Factor: 0.174

CHAIN: A SWISS-PROT/TREMBL: Q51366    KEYWORD: Complete proteome    Lipopolysaccharide biosynthesis    Lyase    NAD    EC: 4.2.1.47 SCOP: c.2.1.2 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Tyrosine-dependent oxidoreductases    GDP-mannose 4,6-dehydratase    Pseudomonas aeruginosa GO:  catalytic activity    GDP-mannose 4,6-dehydratase activity    NAD binding    biosynthesis    nucleotide-sugar metabolism    CHAIN: B SWISS-PROT/TREMBL: Q51366    KEYWORD: Complete proteome    Lipopolysaccharide biosynthesis    Lyase    NAD    EC: 4.2.1.47 SCOP: c.2.1.2 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Tyrosine-dependent oxidoreductases    GDP-mannose 4,6-dehydratase    Pseudomonas aeruginosa GO:  catalytic activity    GDP-mannose 4,6-dehydratase activity    NAD binding    biosynthesis    nucleotide-sugar metabolism    CHAIN: C SWISS-PROT/TREMBL: Q51366    KEYWORD: Complete proteome    Lipopolysaccharide biosynthesis    Lyase    NAD    EC: 4.2.1.47 SCOP: c.2.1.2 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Tyrosine-dependent oxidoreductases    GDP-mannose 4,6-dehydratase    Pseudomonas aeruginosa GO:  catalytic activity    GDP-mannose 4,6-dehydratase activity    NAD binding    biosynthesis    nucleotide-sugar metabolism    CHAIN: D SWISS-PROT/TREMBL: Q51366    KEYWORD: Complete proteome    Lipopolysaccharide biosynthesis    Lyase    NAD    EC: 4.2.1.47 SCOP: c.2.1.2 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Tyrosine-dependent oxidoreductases    GDP-mannose 4,6-dehydratase    Pseudomonas aeruginosa GO:  catalytic activity    GDP-mannose 4,6-dehydratase activity    NAD binding    biosynthesis    nucleotide-sugar metabolism

Image Source: PDB

Loops in ArchDB95 clusters

1rpn_A_53 - EH => SUBCLASS : 4.1.1
1rpn_A_77 - EH => SUBCLASS : 6.38.1
1rpn_A_180 - EH => SUBCLASS : 8.15.1
1rpn_A_209 - AR => SUBCLASS : 5.70.1
1rpn_A_291 - HH => SUBCLASS : 7.5.1
1rpn_A_13 - HE => SUBCLASS : 1.1.1
1rpn_A_149 - HE => SUBCLASS : 2.1.1
1rpn_A_63 - HE => SUBCLASS : 3.1.1
1rpn_A_149 - HE => SUBCLASS : 3.5.3
1rpn_A_103 - HE => SUBCLASS : 4.1.4
1rpn_A_223 - HE => SUBCLASS : 4.3.11
1rpn_A_190 - HE => SUBCLASS : 4.4.1

Loops not clustered in ArchDB

1rpn_A_172 - AR
1rpn_A_217 - AR
1rpn_A_242 - AR
1rpn_A_271 - EH
1rpn_A_249 - EH
1rpn_A_221 - EH
1rpn_A_120 - EH
1rpn_A_28 - EH
1rpn_A_4 - EH
1rpn_A_42 - HE
1rpn_A_252 - HE
1rpn_A_87 - HH
1rpn_A_94 - HH

1rpn A - percentage of sequence identity: 100
1rpn B - percentage of sequence identity: 100
1rpn C - percentage of sequence identity: 100
1rpn D - percentage of sequence identity: 100