PDB: 1rzt Compound: DNA polymerase lambda Classification: TRANSFERASE/DNA Entry date in PDB: 2004-03-02 Resolution [Å]: 2.10 R-Factor: 0.227

CHAIN: A SWISS-PROT/TREMBL: Q9UGP5    KEYWORD: DNA repair    Manganese    Metal-binding    Nuclear protein    Nucleotidyltransferase    Transferase    EC: 2.7.7.7 SCOP: a.60.6.1 All alpha proteins    SAM domain-like    DNA polymerase beta, N-terminal domain-like    DNA polymerase beta, N-terminal domain-like    DNA polymerase lambda    Human (Homo sapiens) SCOP: a.60.12.1 All alpha proteins    SAM domain-like    DNA polymerase beta-like, second domain    DNA polymerase beta-like, second domain    DNA polymerase lambda    Human (Homo sapiens) SCOP: d.218.1.2 Alpha and beta proteins (a+b)    Nucleotidyltransferase    Nucleotidyltransferase    DNA polymerase beta-like    DNA polymerase lambda    Human (Homo sapiens) GO:  intracellular    beta DNA polymerase activity    DNA binding    DNA-directed DNA polymerase activity    DNA repair    DNA replication    CHAIN: E SWISS-PROT/TREMBL: Q9UGP5    KEYWORD: DNA repair    Manganese    Metal-binding    Nuclear protein    Nucleotidyltransferase    Transferase    EC: 2.7.7.7 SCOP: a.60.6.1 All alpha proteins    SAM domain-like    DNA polymerase beta, N-terminal domain-like    DNA polymerase beta, N-terminal domain-like    DNA polymerase lambda    Human (Homo sapiens) SCOP: a.60.12.1 All alpha proteins    SAM domain-like    DNA polymerase beta-like, second domain    DNA polymerase beta-like, second domain    DNA polymerase lambda    Human (Homo sapiens) SCOP: d.218.1.2 Alpha and beta proteins (a+b)    Nucleotidyltransferase    Nucleotidyltransferase    DNA polymerase beta-like    DNA polymerase lambda    Human (Homo sapiens) GO:  intracellular    beta DNA polymerase activity    DNA binding    DNA-directed DNA polymerase activity    DNA repair    DNA replication    CHAIN: I SWISS-PROT/TREMBL: Q9UGP5    KEYWORD: DNA repair    Manganese    Metal-binding    Nuclear protein    Nucleotidyltransferase    Transferase    EC: 2.7.7.7 SCOP: a.60.6.1 All alpha proteins    SAM domain-like    DNA polymerase beta, N-terminal domain-like    DNA polymerase beta, N-terminal domain-like    DNA polymerase lambda    Human (Homo sapiens) SCOP: a.60.12.1 All alpha proteins    SAM domain-like    DNA polymerase beta-like, second domain    DNA polymerase beta-like, second domain    DNA polymerase lambda    Human (Homo sapiens) SCOP: d.218.1.2 Alpha and beta proteins (a+b)    Nucleotidyltransferase    Nucleotidyltransferase    DNA polymerase beta-like    DNA polymerase lambda    Human (Homo sapiens) GO:  intracellular    beta DNA polymerase activity    DNA binding    DNA-directed DNA polymerase activity    DNA repair    DNA replication    CHAIN: M SWISS-PROT/TREMBL: Q9UGP5    KEYWORD: DNA repair    Manganese    Metal-binding    Nuclear protein    Nucleotidyltransferase    Transferase    EC: 2.7.7.7 SCOP: a.60.6.1 All alpha proteins    SAM domain-like    DNA polymerase beta, N-terminal domain-like    DNA polymerase beta, N-terminal domain-like    DNA polymerase lambda    Human (Homo sapiens) SCOP: a.60.12.1 All alpha proteins    SAM domain-like    DNA polymerase beta-like, second domain    DNA polymerase beta-like, second domain    DNA polymerase lambda    Human (Homo sapiens) SCOP: d.218.1.2 Alpha and beta proteins (a+b)    Nucleotidyltransferase    Nucleotidyltransferase    DNA polymerase beta-like    DNA polymerase lambda    Human (Homo sapiens) GO:  intracellular    beta DNA polymerase activity    DNA binding    DNA-directed DNA polymerase activity    DNA repair    DNA replication

Image Source: PDB

Loops in ArchDB40 clusters

1rzt_A_510 - HE => SUBCLASS : 1.1.3
1rzt_A_416 - HE => SUBCLASS : 3.1.8
1rzt_A_389 - HE => SUBCLASS : 4.1.1
1rzt_A_525 - HA => SUBCLASS : 2.2.1
1rzt_A_457 - HA => SUBCLASS : 2.3.1
1rzt_A_537 - HA => SUBCLASS : 5.3.1
1rzt_A_487 - EH => SUBCLASS : 1.1.7
1rzt_A_487 - EH => SUBCLASS : 1.1.10
1rzt_A_424 - AR => SUBCLASS : 1.1.6
1rzt_A_424 - AR => SUBCLASS : 1.1.11
1rzt_A_254 - HH => SUBCLASS : 2.2.1
1rzt_A_346 - HH => SUBCLASS : 4.2.1
1rzt_A_332 - HH => SUBCLASS : 5.9.1
1rzt_A_296 - HH => SUBCLASS : 5.9.1

Loops in ArchDB95 clusters

1rzt_A_487 - EH => SUBCLASS : 1.1.10
1rzt_A_424 - AR => SUBCLASS : 1.2.12
1rzt_A_424 - AR => SUBCLASS : 3.1.5
1rzt_A_254 - HH => SUBCLASS : 2.2.1
1rzt_A_346 - HH => SUBCLASS : 4.8.1
1rzt_A_332 - HH => SUBCLASS : 5.11.1
1rzt_A_296 - HH => SUBCLASS : 5.11.1
1rzt_A_510 - HE => SUBCLASS : 1.2.1
1rzt_A_416 - HE => SUBCLASS : 3.1.3
1rzt_A_525 - HA => SUBCLASS : 2.2.1
1rzt_A_457 - HA => SUBCLASS : 2.3.1
1rzt_A_525 - HA => SUBCLASS : 3.1.1
1rzt_A_537 - HA => SUBCLASS : 4.3.2
1rzt_A_537 - HA => SUBCLASS : 5.4.1

Loops not clustered in ArchDB

1rzt_A_532 - AR
1rzt_A_387 - EH
1rzt_A_411 - EH
1rzt_A_428 - EH
1rzt_A_544 - EH
1rzt_A_470 - HA
1rzt_A_444 - HE
1rzt_A_380 - HE
1rzt_A_273 - HH
1rzt_A_307 - HH
1rzt_A_360 - HH
1rzt_A_371 - HH
1rzt_A_499 - HH

1nzp A - percentage of sequence identity: 100
1rzt A - percentage of sequence identity: 100
1rzt E - percentage of sequence identity: 100
1rzt I - percentage of sequence identity: 100
1rzt M - percentage of sequence identity: 100
1xsl A - percentage of sequence identity: 100
1xsl E - percentage of sequence identity: 100
1xsl I - percentage of sequence identity: 100
1xsl M - percentage of sequence identity: 100
1xsn A - percentage of sequence identity: 99
1xsp A - percentage of sequence identity: 99