PDB: 1s5u Compound: protein ybgc Classification: HYDROLASE Entry date in PDB: 2004-05-11 Resolution [Å]: 1.70 R-Factor: 0.200

CHAIN: A SWISS-PROT/TREMBL: P08999    KEYWORD: Complete proteome    Hydrolase    SCOP: d.38.1.1 Alpha and beta proteins (a+b)    Thioesterase/thiol ester dehydrase-isomerase    Thioesterase/thiol ester dehydrase-isomerase    4HBT-like    Hypothetical protein YbgC    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    catalytic activity    hydrolase activity    hydrolase activity    hydrolase activity    hydrolase activity    CHAIN: B SWISS-PROT/TREMBL: P08999    KEYWORD: Complete proteome    Hydrolase    SCOP: d.38.1.1 Alpha and beta proteins (a+b)    Thioesterase/thiol ester dehydrase-isomerase    Thioesterase/thiol ester dehydrase-isomerase    4HBT-like    Hypothetical protein YbgC    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    catalytic activity    hydrolase activity    hydrolase activity    hydrolase activity    hydrolase activity    CHAIN: C SWISS-PROT/TREMBL: P08999    KEYWORD: Complete proteome    Hydrolase    SCOP: d.38.1.1 Alpha and beta proteins (a+b)    Thioesterase/thiol ester dehydrase-isomerase    Thioesterase/thiol ester dehydrase-isomerase    4HBT-like    Hypothetical protein YbgC    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    catalytic activity    hydrolase activity    hydrolase activity    hydrolase activity    hydrolase activity    CHAIN: D SWISS-PROT/TREMBL: P08999    KEYWORD: Complete proteome    Hydrolase    SCOP: d.38.1.1 Alpha and beta proteins (a+b)    Thioesterase/thiol ester dehydrase-isomerase    Thioesterase/thiol ester dehydrase-isomerase    4HBT-like    Hypothetical protein YbgC    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    catalytic activity    hydrolase activity    hydrolase activity    hydrolase activity    hydrolase activity    CHAIN: E SWISS-PROT/TREMBL: P08999    KEYWORD: Complete proteome    Hydrolase    SCOP: d.38.1.1 Alpha and beta proteins (a+b)    Thioesterase/thiol ester dehydrase-isomerase    Thioesterase/thiol ester dehydrase-isomerase    4HBT-like    Hypothetical protein YbgC    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    catalytic activity    hydrolase activity    hydrolase activity    hydrolase activity    hydrolase activity    CHAIN: F SWISS-PROT/TREMBL: P08999    KEYWORD: Complete proteome    Hydrolase    SCOP: d.38.1.1 Alpha and beta proteins (a+b)    Thioesterase/thiol ester dehydrase-isomerase    Thioesterase/thiol ester dehydrase-isomerase    4HBT-like    Hypothetical protein YbgC    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    catalytic activity    hydrolase activity    hydrolase activity    hydrolase activity    hydrolase activity    CHAIN: G SWISS-PROT/TREMBL: P08999    KEYWORD: Complete proteome    Hydrolase    SCOP: d.38.1.1 Alpha and beta proteins (a+b)    Thioesterase/thiol ester dehydrase-isomerase    Thioesterase/thiol ester dehydrase-isomerase    4HBT-like    Hypothetical protein YbgC    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    catalytic activity    hydrolase activity    hydrolase activity    hydrolase activity    hydrolase activity    CHAIN: H SWISS-PROT/TREMBL: P08999    KEYWORD: Complete proteome    Hydrolase    SCOP: d.38.1.1 Alpha and beta proteins (a+b)    Thioesterase/thiol ester dehydrase-isomerase    Thioesterase/thiol ester dehydrase-isomerase    4HBT-like    Hypothetical protein YbgC    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    catalytic activity    hydrolase activity    hydrolase activity    hydrolase activity    hydrolase activity

Image Source: PDB

Loops in ArchDB40 clusters

1s5u_A_75 - HA => SUBCLASS : 2.2.3
1s5u_A_75 - HA => SUBCLASS : 2.2.7
1s5u_A_89 - HA => SUBCLASS : 5.1.2
1s5u_A_120 - EH => SUBCLASS : 3.3.1
1s5u_A_6 - EH => SUBCLASS : 13.3.1
1s5u_A_56 - AR => SUBCLASS : 8.3.1

Loops in ArchDB95 clusters

1s5u_A_120 - EH => SUBCLASS : 3.1.10
1s5u_A_6 - EH => SUBCLASS : 13.7.1
1s5u_A_56 - AR => SUBCLASS : 8.7.1
1s5u_A_56 - AR => SUBCLASS : 8.10.1
1s5u_A_25 - HH => SUBCLASS : 3.4.2
1s5u_A_25 - HH => SUBCLASS : 3.4.7
1s5u_A_75 - HA => SUBCLASS : 2.2.3
1s5u_A_89 - HA => SUBCLASS : 5.1.1

Loops not clustered in ArchDB

1s5u_A_103 - HA
1s5u_A_47 - HE

1s5u A - percentage of sequence identity: 100
1s5u B - percentage of sequence identity: 100
1s5u C - percentage of sequence identity: 100
1s5u D - percentage of sequence identity: 100
1s5u E - percentage of sequence identity: 100
1s5u F - percentage of sequence identity: 100
1s5u G - percentage of sequence identity: 100
1s5u H - percentage of sequence identity: 100