PDB: 1ubk Compound: periplasmic [nife] hydrogenase small subunit Classification: OXIDOREDUCTASE Entry date in PDB: 2003-04-29 Resolution [Å]: 1.18 R-Factor: 0.117

CHAIN: L SWISS-PROT/TREMBL: P21852    KEYWORD: 3D-structure    Iron    Magnesium    Metal-binding    Nickel    Oxidoreductase    Periplasmic    EC: 1.12.2.1 SCOP: e.18.1.1 Multi-domain proteins (alpha and beta)    Nickel-iron hydrogenase, large subunit    Nickel-iron hydrogenase, large subunit    Nickel-iron hydrogenase, large subunit    Nickel-iron hydrogenase, large subunit    Desulfovibrio vulgaris GO:  ferredoxin hydrogenase activity    nickel ion binding    electron transport    CHAIN: S SWISS-PROT/TREMBL: P21853    KEYWORD: 3D-structure    3Fe-4S    4Fe-4S    Iron-sulfur    Oxidoreductase    Periplasmic    Signal    EC: 1.12.2.1 SCOP: e.19.1.1 Multi-domain proteins (alpha and beta)    Nickel-iron hydrogenase, small subunit    Nickel-iron hydrogenase, small subunit    Nickel-iron hydrogenase, small subunit    Nickel-iron hydrogenase, small subunit    Desulfovibrio vulgaris GO:  ferredoxin hydrogenase complex    ferredoxin hydrogenase activity    iron ion binding    NADH dehydrogenase (ubiquinone) activity    electron transport    mitochondrial electron transport, NADH to ubiquinone

Image Source: PDB

Loops in ArchDB-EC clusters

1ubk_S_231 - HH => SUBCLASS : 22.1.1

Loops not clustered in ArchDB

1ubk_L_317 - AR
1ubk_S_71 - AR
1ubk_S_78 - AR
1ubk_S_145 - EH
1ubk_S_130 - EH
1ubk_S_107 - EH
1ubk_S_92 - EH
1ubk_S_41 - EH
1ubk_S_8 - EH
1ubk_L_492 - EH
1ubk_L_375 - EH
1ubk_L_243 - EH
1ubk_L_47 - EH
1ubk_L_23 - HA
1ubk_L_37 - HA
1ubk_L_239 - HA
1ubk_L_296 - HA
1ubk_L_469 - HA
1ubk_L_480 - HA
1ubk_S_88 - HA
1ubk_L_335 - HA
1ubk_L_202 - HE
1ubk_S_133 - HE
1ubk_S_113 - HE
1ubk_S_94 - HE
1ubk_S_53 - HE
1ubk_S_32 - HE
1ubk_L_423 - HE
1ubk_L_273 - HE
1ubk_L_164 - HH
1ubk_L_61 - HH
1ubk_L_73 - HH
1ubk_S_209 - HH
1ubk_S_194 - HH
1ubk_S_180 - HH
1ubk_L_147 - HH
1ubk_L_87 - HH
1ubk_L_252 - HH
1ubk_L_387 - HH
1ubk_L_400 - HH
1ubk_L_501 - HH
1ubk_L_517 - HH
1ubk_L_534 - HH
1ubk_S_19 - HH
1ubk_S_154 - HH
1ubk_L_106 - HH

1e3d C - percentage of sequence identity: 71
1frv A - percentage of sequence identity: 67
1frv C - percentage of sequence identity: 67
1h2a S - percentage of sequence identity: 100
1h2r S - percentage of sequence identity: 100
1ubh S - percentage of sequence identity: 100
1ubj S - percentage of sequence identity: 100
1ubm S - percentage of sequence identity: 100
1ubo S - percentage of sequence identity: 100
1ubr S - percentage of sequence identity: 100
1ubt S - percentage of sequence identity: 100
1ubu S - percentage of sequence identity: 100
1wuh S - percentage of sequence identity: 100
1wui S - percentage of sequence identity: 100
1wuj S - percentage of sequence identity: 100
1wuk S - percentage of sequence identity: 100
1wul S - percentage of sequence identity: 100
1yq9 A - percentage of sequence identity: 67
1yq9 B - percentage of sequence identity: 67
1yqw A - percentage of sequence identity: 64
1yqw B - percentage of sequence identity: 64
1yqw C - percentage of sequence identity: 64
1yrq A - percentage of sequence identity: 64
1yrq B - percentage of sequence identity: 64
1yrq C - percentage of sequence identity: 64
1yrq D - percentage of sequence identity: 64
1yrq F - percentage of sequence identity: 64
1yrq G - percentage of sequence identity: 64
2frv A - percentage of sequence identity: 67
2frv B - percentage of sequence identity: 69
2frv C - percentage of sequence identity: 67
2frv E - percentage of sequence identity: 67
2frv G - percentage of sequence identity: 67
2frv I - percentage of sequence identity: 67
2frv S - percentage of sequence identity: 67