PDB: 2scu Compound: succinyl-coa ligase Classification: LIGASE Entry date in PDB: 1999-08-02 Resolution [Å]: 2.30 R-Factor: 0.195

CHAIN: A SWISS-PROT/TREMBL: P07459    KEYWORD: 3D-structure    ATP-binding    Complete proteome    Ligase    Phosphorylation    Tricarboxylic acid cycle    EC: 6.2.1.5 SCOP: c.2.1.8 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    CoA-binding domain    Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain    Escherichia coli SCOP: c.23.4.1 Alpha and beta proteins (a/b)    Flavodoxin-like    Succinyl-CoA synthetase domains    Succinyl-CoA synthetase domains    Succinyl-CoA synthetase, alpha-chain, C-terminal domain    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    metabolism    metabolism    metabolism    CHAIN: B SWISS-PROT/TREMBL: P07460    KEYWORD: 3D-structure    Complete proteome    Ligase    Tricarboxylic acid cycle    EC: 6.2.1.5 SCOP: c.23.4.1 Alpha and beta proteins (a/b)    Flavodoxin-like    Succinyl-CoA synthetase domains    Succinyl-CoA synthetase domains    Succinyl-CoA synthetase, beta-chain, C-terminal domain    Escherichia coli SCOP: d.142.1.4 Alpha and beta proteins (a+b)    ATP-grasp    Glutathione synthetase ATP-binding domain-like    Succinyl-CoA synthetase, beta-chain, N-terminal domain    Succinyl-CoA synthetase, beta-chain, N-terminal domain    Escherichia coli GO:   CHAIN: D SWISS-PROT/TREMBL: P07459    KEYWORD: 3D-structure    ATP-binding    Complete proteome    Ligase    Phosphorylation    Tricarboxylic acid cycle    EC: 6.2.1.5 SCOP: c.2.1.8 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    CoA-binding domain    Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain    Escherichia coli SCOP: c.23.4.1 Alpha and beta proteins (a/b)    Flavodoxin-like    Succinyl-CoA synthetase domains    Succinyl-CoA synthetase domains    Succinyl-CoA synthetase, alpha-chain, C-terminal domain    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    metabolism    metabolism    metabolism    CHAIN: E SWISS-PROT/TREMBL: P07460    KEYWORD: 3D-structure    Complete proteome    Ligase    Tricarboxylic acid cycle    EC: 6.2.1.5 SCOP: c.23.4.1 Alpha and beta proteins (a/b)    Flavodoxin-like    Succinyl-CoA synthetase domains    Succinyl-CoA synthetase domains    Succinyl-CoA synthetase, beta-chain, C-terminal domain    Escherichia coli SCOP: d.142.1.4 Alpha and beta proteins (a+b)    ATP-grasp    Glutathione synthetase ATP-binding domain-like    Succinyl-CoA synthetase, beta-chain, N-terminal domain    Succinyl-CoA synthetase, beta-chain, N-terminal domain    Escherichia coli GO:

Image Source: PDB

Loops in ArchDB40 clusters

2scu_B_240 - HE => SUBCLASS : 1.1.3
2scu_B_66 - HE => SUBCLASS : 2.7.1
2scu_B_295 - HE => SUBCLASS : 5.10.1
2scu_B_325 - HE => SUBCLASS : 5.33.1
2scu_B_5 - HE => SUBCLASS : 6.21.1
2scu_B_104 - HA => SUBCLASS : 4.1.11
2scu_B_193 - HA => SUBCLASS : 4.2.1
2scu_B_22 - EH => SUBCLASS : 2.1.1
2scu_B_60 - EH => SUBCLASS : 2.1.1
2scu_B_345 - EH => SUBCLASS : 3.20.1
2scu_B_144 - EH => SUBCLASS : 8.8.1
2scu_B_209 - AR => SUBCLASS : 1.1.16
2scu_B_91 - AR => SUBCLASS : 2.1.1
2scu_B_91 - AR => SUBCLASS : 2.1.8
2scu_B_209 - AR => SUBCLASS : 2.5.2
2scu_B_157 - HH => SUBCLASS : 4.35.1

Loops in ArchDB95 clusters

2scu_B_60 - EH => SUBCLASS : 2.1.1
2scu_A_144 - EH => SUBCLASS : 2.1.1
2scu_B_22 - EH => SUBCLASS : 2.1.2
2scu_B_60 - EH => SUBCLASS : 2.1.2
2scu_A_144 - EH => SUBCLASS : 2.1.5
2scu_A_144 - EH => SUBCLASS : 2.1.8
2scu_A_271 - EH => SUBCLASS : 2.1.11
2scu_B_345 - EH => SUBCLASS : 3.11.1
2scu_A_67 - EH => SUBCLASS : 3.13.1
2scu_A_9 - EH => SUBCLASS : 4.58.1
2scu_A_91 - EH => SUBCLASS : 6.47.1
2scu_B_144 - EH => SUBCLASS : 8.25.1
2scu_A_171 - EH => SUBCLASS : 10.14.1
2scu_B_91 - AR => SUBCLASS : 1.2.8
2scu_B_209 - AR => SUBCLASS : 1.2.17
2scu_B_91 - AR => SUBCLASS : 2.1.6
2scu_B_209 - AR => SUBCLASS : 3.1.7
2scu_A_33 - AR => SUBCLASS : 5.48.1
2scu_B_250 - AR => SUBCLASS : 6.41.1
2scu_A_132 - AR => SUBCLASS : 7.45.1
2scu_B_157 - HH => SUBCLASS : 4.51.1
2scu_B_133 - HE => SUBCLASS : 0.1.55
2scu_A_101 - HE => SUBCLASS : 1.1.1
2scu_B_240 - HE => SUBCLASS : 1.2.1
2scu_B_354 - HE => SUBCLASS : 2.5.5
2scu_A_77 - HE => SUBCLASS : 3.1.1
2scu_B_325 - HE => SUBCLASS : 3.1.2
2scu_B_66 - HE => SUBCLASS : 3.8.1
2scu_A_155 - HE => SUBCLASS : 3.31.2
2scu_A_213 - HE => SUBCLASS : 4.15.2
2scu_A_187 - HE => SUBCLASS : 5.2.1
2scu_B_295 - HE => SUBCLASS : 5.9.1
2scu_B_5 - HE => SUBCLASS : 6.14.1
2scu_B_193 - HA => SUBCLASS : 3.1.2
2scu_A_125 - HA => SUBCLASS : 3.13.1
2scu_B_104 - HA => SUBCLASS : 4.1.13

Loops in ArchDB-EC clusters

2scu_B_157 - HH => SUBCLASS : 4.34.1

Loops not clustered in ArchDB

2scu_A_132 - AR
2scu_B_96 - AR
2scu_A_117 - AR
2scu_B_91 - AR
2scu_B_96 - AR
2scu_B_209 - AR
2scu_B_250 - AR
2scu_A_33 - AR
2scu_A_117 - AR
2scu_B_120 - EH
2scu_A_50 - EH
2scu_B_368 - EH
2scu_A_202 - EH
2scu_A_229 - EH
2scu_B_313 - EH
2scu_B_285 - EH
2scu_B_259 - EH
2scu_B_215 - EH
2scu_B_193 - HA
2scu_A_45 - HA
2scu_B_104 - HA
2scu_A_125 - HA
2scu_B_80 - HA
2scu_B_80 - HA
2scu_B_43 - HA
2scu_A_45 - HA
2scu_B_43 - HA
2scu_B_266 - HE
2scu_A_18 - HE
2scu_A_56 - HE
2scu_A_258 - HE
2scu_B_172 - HE
2scu_B_28 - HE
2scu_B_227 - HH

1cqi B - percentage of sequence identity: 100
1cqi E - percentage of sequence identity: 100
1cqj B - percentage of sequence identity: 100
1cqj E - percentage of sequence identity: 100
1jkj B - percentage of sequence identity: 100
1jkj E - percentage of sequence identity: 100
1jll B - percentage of sequence identity: 99
1jll E - percentage of sequence identity: 99
1scu B - percentage of sequence identity: 100
1scu E - percentage of sequence identity: 100
2scu B - percentage of sequence identity: 100
2scu E - percentage of sequence identity: 100