PDB: 5rub Compound: Rubisco (ribulose-1,5-bisphosphate carboxylase/oxy Classification: LYASE(CARBON-CARBON) Entry date in PDB: 1991-10-15 Resolution [Å]: 1.70 R-Factor: 0.180

CHAIN: A SWISS-PROT/TREMBL: P04718    KEYWORD: 3D-structure    Carbon dioxide fixation    Lyase    Monooxygenase    Multigene family    Oxidoreductase    Photorespiration    Photosynthesis    EC: 4.1.1.39 SCOP: c.1.14.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    RuBisCo, C-terminal domain    RuBisCo, large subunit, C-terminal domain    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Rhodospirillum rubrum SCOP: d.58.9.1 Alpha and beta proteins (a+b)    Ferredoxin-like    RuBisCO, large subunit, small (N-terminal) domain    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Rhodospirillum rubrum GO:  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)    ribulose-bisphosphate carboxylase activity    carbon utilization by fixation of carbon dioxide    CHAIN: B SWISS-PROT/TREMBL: P04718    KEYWORD: 3D-structure    Carbon dioxide fixation    Lyase    Monooxygenase    Multigene family    Oxidoreductase    Photorespiration    Photosynthesis    EC: 4.1.1.39 SCOP: c.1.14.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    RuBisCo, C-terminal domain    RuBisCo, large subunit, C-terminal domain    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Rhodospirillum rubrum SCOP: d.58.9.1 Alpha and beta proteins (a+b)    Ferredoxin-like    RuBisCO, large subunit, small (N-terminal) domain    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Rhodospirillum rubrum GO:  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)    ribulose-bisphosphate carboxylase activity    carbon utilization by fixation of carbon dioxide

Image Source: PDB

Loops in ArchDB40 clusters

5rub_A_347 - HA => SUBCLASS : 2.2.1
5rub_A_70 - HA => SUBCLASS : 4.1.12
5rub_A_302 - EH => SUBCLASS : 1.1.1
5rub_A_227 - EH => SUBCLASS : 5.30.1
5rub_A_423 - HH => SUBCLASS : 1.2.2
5rub_A_431 - HH => SUBCLASS : 1.2.6
5rub_A_423 - HH => SUBCLASS : 1.2.8
5rub_A_403 - HH => SUBCLASS : 3.1.1
5rub_A_403 - HH => SUBCLASS : 3.3.1
5rub_A_441 - HH => SUBCLASS : 3.14.1

Loops in ArchDB95 clusters

5rub_A_302 - EH => SUBCLASS : 1.1.13
5rub_A_118 - EH => SUBCLASS : 1.1.16
5rub_A_227 - EH => SUBCLASS : 5.32.1
5rub_A_354 - AR => SUBCLASS : 6.15.1
5rub_A_431 - HH => SUBCLASS : 1.2.3
5rub_A_423 - HH => SUBCLASS : 1.2.11
5rub_A_403 - HH => SUBCLASS : 3.1.1
5rub_A_403 - HH => SUBCLASS : 3.2.1
5rub_A_441 - HH => SUBCLASS : 3.10.1
5rub_A_347 - HA => SUBCLASS : 2.2.1
5rub_A_347 - HA => SUBCLASS : 3.1.1
5rub_A_70 - HA => SUBCLASS : 4.1.14

Loops in ArchDB-EC clusters

5rub_A_441 - HH => SUBCLASS : 3.18.1

Loops not clustered in ArchDB

5rub_A_354 - AR
5rub_A_23 - EH
5rub_A_389 - EH
5rub_A_364 - EH
5rub_A_319 - EH
5rub_A_284 - EH
5rub_A_258 - EH
5rub_A_189 - EH
5rub_A_160 - EH
5rub_A_80 - EH
5rub_A_347 - HA
5rub_A_70 - HA
5rub_A_305 - HE
5rub_A_336 - HE
5rub_A_376 - HE
5rub_A_292 - HE
5rub_A_269 - HE
5rub_A_237 - HE
5rub_A_204 - HE
5rub_A_173 - HE
5rub_A_101 - HE
5rub_A_38 - HE
5rub_A_14 - HE
5rub_A_143 - HE
5rub_A_130 - HH

1rba A - percentage of sequence identity: 99
1rba B - percentage of sequence identity: 99
1rus A - percentage of sequence identity: 100
1rus B - percentage of sequence identity: 100
2rus A - percentage of sequence identity: 100
2rus B - percentage of sequence identity: 100
5rub A - percentage of sequence identity: 100
5rub B - percentage of sequence identity: 100
9rub A - percentage of sequence identity: 100
9rub B - percentage of sequence identity: 100