Information on SUBCLASS 5.20.1 |
Subclass Accession number: 8598
Subclass: 5.20.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 15.6 +/- 19.0 Average RMSD (Å) : 1.067 +/- 0.216 Consensus geometry
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Consensus Sequence: | XhGhphpXh |
(φψ)-conformation: | aagpppabb |
Pattern: | [egr] | [acfk] | [fmvy] | [CFIKV] | [DR] | [aimt] | [GIVWY] | [afit] | [el] | [flv] | [GN] | [fgi] | [ADKNS] | [LMPY] | [dhqy] | x | [FILY] | x |
Conservation: | -0.453 | -0.597 | 0.089 | -0.522 | 1.359 | -0.274 | -0.656 | -0.699 | -0.191 | -0.021 | 3.174 | -0.976 | 0.152 | 0.006 | -0.227 | -0.816 | 1.133 | -0.481 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a8h_*_76 | 1a8h | - | 76 | 93 | GRFKRAWDLLGIAYDDFI | HHHHHHHHHTT---SEEE | aaaaaaaaaavxbxabbx |
1d7k_B_206 | 1d7k | B | 216 | 233 | RCVFDMGAEVGFSMYLLD | HHHHHHHHTTT----EEE | aaaaaaaaaagxxbaxbb |
1euc_B_273 | 1euc | B | 277 | 294 | MATCDIIFLNGGKPANFL | HHHHHHHHHTT--BSEEE | aaaaaaaaaavbbxabbb |
1f3t_A_206 | 1f3t | A | 216 | 233 | RFVFDMGTELGFNMHILD | HHHHHHHHHTT----EEE | aaaaaaaaaavxxxabbb |
1f7u_A_260 | 1f7u | A | 275 | 292 | EKYIDTYARLNIKYDVYS | HHHHHHHHHTT---SEEE | aaaaaaaaaalbbxabbx |
1knw_A_198 | 1knw | A | 206 | 223 | GAMVRQVIEFGQDLQAIS | HHHHHHHHHHT---SEEE | aaaaaaaaaavbxbabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1euc_B_273 | 1euc | B | PO4PHOSPHATE ION | A - 273 |
1euc_B_273 | 1euc | B | PO4PHOSPHATE ION | G - 274 |
1euc_B_273 | 1euc | B | PO4PHOSPHATE ION | L - 275 |
1euc_B_273 | 1euc | B | PO4PHOSPHATE ION | A - 276 |
1euc_B_273 | 1euc | B | ZNZINC ION | A - 276 |
1euc_B_273 | 1euc | B | ZNZINC ION | M - 277 |
1euc_B_273 | 1euc | B | ZNZINC ION | T - 279 |
1euc_B_273 | 1euc | B | ZNZINC ION | C - 280 |
1euc_B_273 | 1euc | B | ZNZINC ION | D - 281 |
1euc_B_273 | 1euc | B | ZNZINC ION | I - 283 |
1euc_B_273 | 1euc | B | ZNZINC ION | P - 290 |
1euc_B_273 | 1euc | B | ZNZINC ION | N - 292 |
1euc_B_273 | 1euc | B | ZNZINC ION | F - 293 |
1euc_B_273 | 1euc | B | ZNZINC ION | L - 294 |
1euc_B_273 | 1euc | B | PO4PHOSPHATE ION | D - 295 |
Clusters included in this Subclass |
CLUSTER: HE.6.86 |
CLUSTER: HE.7.116 |