Information on SUBCLASS 3.6.5 |
Subclass Accession number: 229
Subclass: 3.6.5 ![]() Type: HE alpha-beta DB: ArchDB40 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() |
Number of loops: 4 Average sequence ID (%) : 10.5 +/- 10.4 Average RMSD (Å) : 1.050 +/- 0.191 Consensus geometry
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Consensus Sequence: | EXGXpXh |
(φψ)-conformation: | aagpabb |
Pattern: | x | x | x | [ALVY] | x | x | x | x | x | x | x | [G] | [AITV] | [EKST] | x | [AGLM] | [AKTV] | x | x |
Conservation: | -0.967 | -0.272 | -0.512 | -0.058 | -0.034 | -0.603 | -0.331 | -0.467 | -0.285 | 0.824 | -0.285 | 3.808 | 0.306 | 0.306 | -0.198 | -0.331 | -0.103 | -0.285 | -0.512 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c0a_A_331 | 1c0a | A | 334 | 352 | IDEYGNFVKIYGAKGLAYI | HHHHHHHHHHTT-S---EE | aaaaaaaaaaagxabbxbb |
1jj2_M_78 | 1jj2 | M | 85 | 103 | GLLAGLRAQEAGVEEAVLD | HHHHHHHHHHTT--B-EEE | aaaaaaaaaaavxabbbxb |
1r0t_B_41 | 1r0t | B | 41 | 59 | ECVLCAHNLEQGTSVGKKH | HHHHHHHHHHH-----EEE | aaaaaaaaaaavxaxbxab |
2pii_*_13 | 2pii | - | 13 | 31 | LDDVREALAEVGITGMTVT | HHHHHHHHHHHT----EEE | aaaaaaaaaaagxabbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1c0a_A_331 | 1c0a | A | AMPADENOSINE MONOPHOSPHATE | A - 346 |
1c0a_A_331 | 1c0a | A | AMPADENOSINE MONOPHOSPHATE | K - 347 |
1c0a_A_331 | 1c0a | A | AMPADENOSINE MONOPHOSPHATE | G - 348 |
1c0a_A_331 | 1c0a | A | AMPADENOSINE MONOPHOSPHATE | L - 349 |
1c0a_A_331 | 1c0a | A | AMPADENOSINE MONOPHOSPHATE | A - 350 |
1c0a_A_331 | 1c0a | A | AMPADENOSINE MONOPHOSPHATE | Y - 351 |
Clusters included in this Subclass |
CLUSTER: HE.6.59 |