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Information on SUBCLASS 5.28.1
Subclass Accession number: 2475
Subclass: 5.28.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0008289 (>75 %)  
SCOP : 47698 (>75 %)  47699 (>75 %)  47700 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 10.4 +/- 12.2
Average RMSD (Å) : 0.800 +/- 0.200

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: phXXXXphX
(φψ)-conformation: aalpabpaa
Pattern: xxx[DK][EKS][AL]x[HI][EGK][FKL][NS][AL]x[DES][LTY][HLV]
Conservation:-0.753-0.059-0.4751.4600.6340.566-1.8620.075-0.198-0.8912.0090.566-0.8911.050-0.475-0.753
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dbt_A_1271dbt   A129144IMKDELLIEKSLIDTVHHHHTS---S-HHHHHaaaaaavxaxxaaaaa
1izm_A_101izm   A1025QQLKSAGIGFNATELHHHHHHTT-S--HHHHHaaaaaavxabxaaaaa
1kz7_A_7461kz7   A750765ECQKKLDHKLSLDSYLHHHHHHT-SS-HHHHHaaaaaavxabxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1izm_A_101izm   A     MSESELENOMETHIONINE Q - 10
1izm_A_101izm   A     MSESELENOMETHIONINE Q - 11
1izm_A_101izm   A     MSESELENOMETHIONINE L - 12
1izm_A_101izm   A     MSESELENOMETHIONINE K - 13
1izm_A_101izm   A     MSESELENOMETHIONINE N - 20
1izm_A_101izm   A     MSESELENOMETHIONINE A - 21
1izm_A_101izm   A     MSESELENOMETHIONINE L - 24
1izm_A_101izm   A     MSESELENOMETHIONINE C - 33
1kz7_A_7461kz7   A     MSESELENOMETHIONINE F - 747
1kz7_A_7461kz7   A     MSESELENOMETHIONINE F - 748
1kz7_A_7461kz7   A     MSESELENOMETHIONINE E - 750
1kz7_A_7461kz7   A     MSESELENOMETHIONINE C - 751
1kz7_A_7461kz7   A     MSESELENOMETHIONINE K - 754
1kz7_A_7461kz7   A     MSESELENOMETHIONINE Y - 764
1kz7_A_7461kz7   A     MSESELENOMETHIONINE L - 765

Clusters included in this Subclass
CLUSTER: HH.6.101