Information on SUBCLASS 6.15.1 |
Subclass Accession number: 780
Subclass: 6.15.1 ![]() Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() Conserved Annotation GO : GO:0005529 (>75 %) GO:0030246 (>75 %) SCOP : 56435 (>75 %) 56436 (>75 %) 56437 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 34.4 +/- 22.4 Average RMSD (Å) : 0.425 +/- 0.222 Consensus geometry
|
Consensus Sequence: | LpppphFppW |
(φψ)-conformation: | pbaaallabb |
Pattern: | [C] | [ALV] | [AEGS] | [L] | x | [DKS] | x | [ET] | [AG] | [FY] | [QRT] | x | [W] | x | [ADN] | x |
Conservation: | 1.988 | -0.390 | -0.560 | 0.408 | -0.758 | -0.391 | -0.663 | -0.111 | 0.137 | 0.670 | -0.343 | -0.605 | 2.620 | -0.797 | -0.427 | -0.777 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gz2_A_113 | 1gz2 | A | 113 | 128 | CAALRDEEAFTSWAAR | EEEE-TTTTSS-EEEE | bbbxxaaalvabbbxb |
1j34_A_102 | 1j34 | A | 102 | 117 | CLGLEKETGFRKWVNI | EEEE-GGGTT-S-EEE | bbbxbaaavlabxbxb |
1jzn_A_106 | 1jzn | A | 106 | 121 | CVELVSLTGYRLWNDQ | EEEE-GGGTT-SEEEE | bbbxxaaavvabbbxb |
1qdd_A_115 | 1qdd | A | 115 | 130 | CVSLTSSTGFQKWKDV | EEEEEGGGTT-SEEEE | bbbxbaaavvabbbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gz2_A_113 | 1gz2 | A | SEPPHOSPHOSERINE | A - 121 |
1j34_A_102 | 1j34 | A | CGUGAMMA-CARBOXY-GLUTAMIC ACID | N - 116 |
1jzn_A_106 | 1jzn | A | GALD-GALACTOSE | E - 108 |
1jzn_A_106 | 1jzn | A | GLCGLUCOSE | L - 112 |
1jzn_A_106 | 1jzn | A | GLCGLUCOSE | N - 119 |
1jzn_A_106 | 1jzn | A | GALD-GALACTOSE | N - 119 |
1jzn_A_106 | 1jzn | A | CACALCIUM ION | N - 119 |
1jzn_A_106 | 1jzn | A | GALD-GALACTOSE | D - 120 |
1jzn_A_106 | 1jzn | A | CACALCIUM ION | D - 120 |
1jzn_A_106 | 1jzn | A | GALD-GALACTOSE | Q - 121 |
1jzn_A_106 | 1jzn | A | CACALCIUM ION | Q - 121 |
Clusters included in this Subclass |
CLUSTER: HA.7.64 |
CLUSTER: HA.8.43 |