Information on SUBCLASS 2.5.3 |
Subclass Accession number: 4616
Subclass: 2.5.3 ![]() Type: HH alpha-alpha DB: ArchDB95 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() |
Number of loops: 7 Average sequence ID (%) : 14.0 +/- 14.0 Average RMSD (Å) : 0.529 +/- 0.221 Consensus geometry
|
Consensus Sequence: | XXXcXX |
(φψ)-conformation: | aalbaa |
Pattern: | [aglv] | [afklv] | x | x | [afkv] | [aglw] | x | x | x | [EGS] | [DKNY] | x | [AEKNR] | [fgklt] | [ALY] |
Conservation: | -0.359 | -0.539 | -0.779 | -0.656 | -0.419 | -0.608 | -0.004 | -0.656 | -0.303 | 2.503 | 1.399 | -0.609 | 0.594 | -0.886 | 1.321 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bo4_A_37 | 1bo4 | A | 43 | 57 | ALDLFGREFGDVATY | HHHHHHHHTT-HHHH | aaaaaaaaavbaaaa |
1dxy_*_120 | 1dxy | - | 121 | 135 | GKVQAQLQAGDYEKA | HHHHHHHHTT-HHHH | aaaaaaaaavbaaaa |
1iq0_A_361 | 1iq0 | A | 363 | 377 | LVRAALALAGYPALA | HHHHHHHHTT-HHHH | aaaaaaaaavbaaaa |
1kbl_A_115 | 1kbl | A | 115 | 129 | AVEGFAKKTGNPRFA | HHHHHHHHHT-HHHH | aaaaaaaaavbaaaa |
1ni9_A_6 | 1ni9 | A | 18 | 32 | LAGYKWLGRGDKNTA | HHHHHHHHTT-HHHH | aaaaaaaaavxaaaa |
1qsa_A_69 | 1qsa | A | 77 | 91 | RFVNELARREDWRGL | HHHHHHHHTT-HHHH | aaaaaaaaavxaaaa |
2hgs_A_160 | 2hgs | A | 162 | 176 | VHRHVLSVLSKTKEA | HHHHHHHHTT-HHHH | aaaaaaaaavbaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bo4_A_37 | 1bo4 | A | COACOENZYME A | E - 50 |
1bo4_A_37 | 1bo4 | A | SPDSPERMIDINE | F - 51 |
1bo4_A_37 | 1bo4 | A | COACOENZYME A | F - 51 |
1bo4_A_37 | 1bo4 | A | SPDSPERMIDINE | Y - 57 |
Clusters included in this Subclass |
CLUSTER: HH.3.109 |
CLUSTER: HH.4.194 |