Information on SUBCLASS 5.11.1 |
Subclass Accession number: 4899
Subclass: 5.11.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 29.1 +/- 24.3 Average RMSD (Å) : 0.464 +/- 0.169 Consensus geometry
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Consensus Sequence: | XXXXGhcpp |
(φψ)-conformation: | aappgbpaa |
Pattern: | x | [aegkq] | [aefl] | [AFLTV] | x | [adkns] | x | [ekp] | [GN] | [AFIVW] | [DGS] | [krt] | [DEKRS] | [ikmtv] | [AC] | [degknq] |
Conservation: | -0.965 | -0.465 | -0.939 | -0.211 | -0.936 | -0.541 | -0.449 | -0.342 | 2.503 | 0.015 | 1.449 | -0.251 | 0.475 | -0.545 | 1.541 | -0.338 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bpy_A_56 | 1bpy | A | 56 | 71 | GAEAKKLPGVGTKIAE | HHHHHTSSS--HHHHH | aaaaaaxxgxbaaaaa |
1cuk_*_107 | 1cuk | - | 107 | 122 | VGALVKLPGIGKKTAE | HHHHHTSTT--HHHHH | aaaaaabpvxxaaaaa |
1ezm_*_227 | 1ezm | - | 233 | 248 | FYLLANSPGWDTRKAF | HHHHHTSTT--HHHHH | aaaaaaxpvbbaaaaa |
1jms_A_244 | 1jms | A | 249 | 264 | FKLFTSVFGVGLKTAE | HHHHHTSTT--HHHHH | aaaaaaxpvxxaaaaa |
1m3q_A_233 | 1m3q | A | 237 | 252 | HKALCILPGVGTKVAD | HHHHTTSTT--HHHHH | aaaaaaxxvbbaaaaa |
1mun_*_108 | 1mun | - | 108 | 123 | FEEVAALPGVGRSTAG | HHHHHTSTT--HHHHH | aaaaaaxpvbxaaaaa |
1nn5_A_99 | 1nn5 | A | 103 | 118 | VAFTGAKENFSLDWCK | HHHHHTSTT--HHHHH | aaaaaaxxvbxaaaaa |
1pu6_A_120 | 1pu6 | A | 120 | 135 | REWLLDQKGIGKESAD | HHHHHTSTT--HHHHH | aaaaaaxxvxxaaaaa |
1rzt_A_296 | 1rzt | A | 296 | 311 | YQEACSIPGIGKRMAE | HHHHHHSTT--HHHHH | aaaaaaxxgbbaaaaa |
1rzt_A_332 | 1rzt | A | 335 | 350 | LELFSNIWGAGTKTAQ | HHHHHTSTT--HHHHH | aaaaaaxpgbxaaaaa |
2abk_*_108 | 2abk | - | 108 | 123 | RAALEALPGVGRKTAN | HHHHHHSTT--HHHHH | aaaaaaxpvbbaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1m3q_A_233 | 1m3q | A | DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE | K - 249 |
1m3q_A_233 | 1m3q | A | ANG8-AMINOGUANINE | K - 249 |
1m3q_A_233 | 1m3q | A | ANG8-AMINOGUANINE | C - 253 |
1m3q_A_233 | 1m3q | A | ANG8-AMINOGUANINE | L - 256 |
1m3q_A_233 | 1m3q | A | ANG8-AMINOGUANINE | M - 257 |
1mun_*_108 | 1mun | * | IMDIMIDAZOLE | S - 120 |
1mun_*_108 | 1mun | * | IMDIMIDAZOLE | T - 121 |
1mun_*_108 | 1mun | * | IMDIMIDAZOLE | A - 122 |
1mun_*_108 | 1mun | * | IMDIMIDAZOLE | A - 124 |
1nn5_A_99 | 1nn5 | A | 2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE | A - 99 |
1nn5_A_99 | 1nn5 | A | 2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE | S - 101 |
1nn5_A_99 | 1nn5 | A | 2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE | G - 102 |
1nn5_A_99 | 1nn5 | A | 2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE | V - 103 |
1nn5_A_99 | 1nn5 | A | 2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE | F - 105 |
1nn5_A_99 | 1nn5 | A | 2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE | T - 106 |
1nn5_A_99 | 1nn5 | A | MGMAGNESIUM ION | D - 115 |
1pu6_A_120 | 1pu6 | A | SEO2-MERCAPTOETHANOL | E - 132 |
Clusters included in this Subclass |
CLUSTER: HH.6.21 |