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Information on SUBCLASS 2.8.1
Subclass Accession number: 5438
Subclass: 2.8.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 50.4 +/- 28.6
Average RMSD (Å) : 0.312 +/- 0.083

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXGPhS
(φψ)-conformation: aaepbb
Pattern: [er][adekq]x[ilm][akm][aekr]x[ilv][ay]xx[g][p][iv][as][cv][ag][imv]
Conservation:0.351-0.721-0.9360.210-0.771-0.725-0.8640.150-0.286-1.194-0.9902.0042.5510.6390.2680.0230.0540.236
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cs8_A_1191cs8   A119136EKALMKAVATVGPISVAIHHHHHHHHHHH--EEEEEaaaaaaaaaaaepbxbbb
1deu_A_1381deu   A138155REKMMAEIYANGPISCGIHHHHHHHHHHH--EEEEEaaaaaaaaaaaepbbbxb
1fh0_A_1191fh0   A119136EKALMKAVATVGPISVAMHHHHHHHHHHT--EEEEEaaaaaaaaaaaepbxbbb
1m6d_A_1171m6d   A117134EQKLAAWLAKRGPISVAIHHHHHHHHHHH--EEEEEaaaaaaaaaaaepbxbxb
1me4_A_1171me4   A117134EAQIAAWLAVNGPVAVAVHHHHHHHHHHH--EEEEEaaaaaaaaaaaepbxbxb
1mem_A_1181mem   A118135EKALKRAVARVGPVSVAIHHHHHHHHHHT--EEEEEaaaaaaaaaaaepbxbbb
1mhw_A_1191mhw   A119136EKALMKAVATVGPISVAIHHHHHHHHHHT-SEEEEEaaaaaaaaaaaepbxbbb
1ms6_A_1211ms6   A121138EDVLKEAVANKGPVSVGVHHHHHHHHHHT--EEEEEaaaaaaaaaaaepbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m6d_A_1171m6d   A     MYP4-MORPHOLIN-4-YL-PIPERIDINE-1-CARBOXYLIC ACID [1-(3-BENZENESULFONYL-1-PROPYL-ALLYLCARBAMOYL)-2-PHENYLETHYL]-AMIDE A - 133
1me4_A_1171me4   A     T10[1-(1-BENZYL-3-HYDROXY-2-OXO-PROPYLCARBAMOYL)-2-PHENYL -ETHYL]-CARBAMIC ACID BENZYL ESTER A - 133
1me4_A_1171me4   A     T10[1-(1-BENZYL-3-HYDROXY-2-OXO-PROPYLCARBAMOYL)-2-PHENYL -ETHYL]-CARBAMIC ACID BENZYL ESTER V - 134
1ms6_A_1211ms6   A     BLNMORPHOLINE-4-CARBOXYLIC ACID [1S-(2-BENZYLOXY-1R-CYANO -ETHYLCARBAMOYL)-3-METHYL-BUTYL]AMIDE V - 136
1ms6_A_1211ms6   A     BLNMORPHOLINE-4-CARBOXYLIC ACID [1S-(2-BENZYLOXY-1R-CYANO -ETHYLCARBAMOYL)-3-METHYL-BUTYL]AMIDE G - 137
1ms6_A_1211ms6   A     BLNMORPHOLINE-4-CARBOXYLIC ACID [1S-(2-BENZYLOXY-1R-CYANO -ETHYLCARBAMOYL)-3-METHYL-BUTYL]AMIDE V - 138

Clusters included in this Subclass
CLUSTER: HE.2.52