Information on SUBCLASS 4.9.1 |
Subclass Accession number: 6289
Subclass: 4.9.1 ![]() Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() |
Number of loops: 18 Average sequence ID (%) : 23.6 +/- 23.0 Average RMSD (Å) : 0.517 +/- 0.309 Consensus geometry
|
Consensus Sequence: | XpXcpGXh |
(φψ)-conformation: | bbagagbb |
Pattern: | x | x | [dkpqrst] | [adgkns] | [gkn] | [cdeny] | [gw] | [adgnst] | [afilmpy] | [dehqst] | [acfiklt] |
Conservation: | -1.000 | -1.090 | -0.379 | -0.553 | 0.853 | 0.054 | 2.370 | -0.121 | -0.192 | 0.040 | -0.981 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c0a_A_436 | 1c0a | A | 436 | 446 | FEDDGEGGLTA | EEE-SSS-EEE | bbxavavbbbx |
1fv1_B_148 | 1fv1 | B | 148 | 157 | .IQNGDWTFQT | .EE-SSS-EEE | .bxavavbbbb |
1hdm_B_142 | 1hdm | B | 142 | 151 | .QPNGDWTYQT | .EE-SSS-EEE | .xxavavbbbb |
1hpg_A_117 | 1hpg | A | 117 | 127 | TVDLYNGSTQD | EEE-SSS-EEE | bbxalavbbbx |
1jhl_H_92 | 1jhl | H | 97 | 107 | TRDDNYGAMDY | EEE-SSSSEEE | bxxagagxbab |
1k5n_A_234 | 1k5n | A | 234 | 243 | .RPAGDRTFQK | .EE-SSS-EEE | .bxavagxbbb |
1l0q_A_335 | 1l0q | A | 337 | 346 | KWDFGDGSSS. | EEE-SSS-EE. | bxbavavbbb. |
1l1d_A_435 | 1l1d | A | 435 | 445 | KYDSGCGWPSF | EE--SSSS-EE | xbxavagbpbb |
1lk2_A_234 | 1lk2 | A | 234 | 243 | .RPAGDGTFQK | .EE-SSS-EEE | .bxavavbbbb |
1lml_*_131 | 1lml | - | 131 | 141 | HVKDHAGAIVT | EEE-SSS-EEE | bbxavavbbbx |
1mhc_A_234 | 1mhc | A | 234 | 243 | .RPSGDGTFQK | .EE-SSS-EEE | .bxagagbbbb |
1n7v_A_355 | 1n7v | A | 358 | 368 | YKTDGYGGATC | EEE-SSSEEEE | bbbavavxbbb |
1omh_A_211 | 1omh | A | 211 | 221 | LRYGKDGNFDL | EEE-SSS-EEE | bbxavNgxbbx |
1uvq_B_148 | 1uvq | B | 148 | 157 | .IRNGDWTFQI | .EE-SSS-EEE | .bxavavbbbb |
2apr_*_241 | 2apr | - | 241 | 250 | .SDNGDGTYTI | .EE-SSS-EEE | .bxavavbbbb |
2sga_*_117 | 2sga | - | 117 | 127 | RVYLYNGSYQD | EEE-SSS-EEE | bbxavavbbbx |
3fru_A_225 | 3fru | A | 228 | 238 | TGPNGDGSFHA | EEE-SSS-EEE | bbxagagxbbb |
7mdh_A_323 | 7mdh | A | 328 | 338 | CRSKGDGDYEL | EE--SSS--EE | bbbavagbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1k5n_A_234 | 1k5n | A | GOLGLYCEROL | F - 241 |
1l1d_A_435 | 1l1d | A | CACCACODYLATE ION | W - 442 |
1lk2_A_234 | 1lk2 | A | MPD2-METHYL-2,4-PENTANEDIOL | R - 234 |
1lk2_A_234 | 1lk2 | A | MPD2-METHYL-2,4-PENTANEDIOL | Q - 242 |
1n7v_A_355 | 1n7v | A | ACTACETATE ION | A - 356 |
1n7v_A_355 | 1n7v | A | ACTACETATE ION | Y - 358 |
1omh_A_211 | 1omh | A | MSESELENOMETHIONINE | N - 218 |
1uvq_B_148 | 1uvq | B | GLYGLYCINE | R - 149 |
3fru_A_225 | 3fru | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 225 |
3fru_A_225 | 3fru | A | FUCFUCOSE | N - 225 |
3fru_A_225 | 3fru | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 241 |
3fru_A_225 | 3fru | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 242 |
3fru_A_225 | 3fru | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 243 |
3fru_A_225 | 3fru | A | MANALPHA-D-MANNOSE | E - 243 |
3fru_A_225 | 3fru | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 244 |
3fru_A_225 | 3fru | A | MANALPHA-D-MANNOSE | V - 244 |
3fru_A_225 | 3fru | A | MANALPHA-D-MANNOSE | K - 245 |
Clusters included in this Subclass |
CLUSTER: HA.4.41 |
CLUSTER: HA.6.24 |