ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.5

Subclass Accession number: 6646
Subclass: 2.1.5

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 10.1 +/- 13.7
Average RMSD (Å) : 0.644 +/- 0.181

Consensus geometry

d (Å): 11

delta (°): 0-45

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XXhpph
(φψ)-conformation:	bbpabb

Pattern:	x	[afkltv]	x	[aglpvy]	[ADEQ]	[aeknqrs]	x	x
Conservation:	-0.788	-0.376	-0.544	-0.565	2.148	0.036	0.089	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bg6_*_58	1bg6	-	59	66	TAHPDLLT	EE--SEEE	bxbxabbb
1c0d_A_197	1c0d	A	200	206	VEGVQSY.	EE-BSEE.	bxxxabb.
1c96_A_61	1c96	A	63	70	RLRPDRVA	EE--SEEE	xbbpabbb
1dnl_A_178	1dnl	A	182	189	RVSLEQIE	EE--SEEE	bxxbabbb
1euh_A_12	1euh	A	13	20	WKLSENEI	EE--SSEE	xbxbabbb
1h6l_A_35	1h6l	A	37	43	TVNAAAE.	EE--SEE.	bbbxabb.
1nif_*_169	1nif	-	169	176	PLTYDKIY	EE--SEEE	xbbxabbb
1pkh_A_32	1pkh	A	34	41	VTLGDEFI	EEB-SEEE	bbxxabbb
1qdl_A_110	1qdl	A	112	119	FFTPDNII	EE--SEEE	bbbpabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c96_A_61	1c96	A	FLCCITRATE ANION	Q - 72
1c96_A_61	1c96	A	FS4IRON/SULFUR CLUSTER	Q - 72
1c96_A_61	1c96	A	OXBOUND OXYGEN	Q - 72
1dnl_A_178	1dnl	A	FMNFLAVIN MONONUCLEOTIDE	W - 178
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	F - 181
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	R - 182
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	V - 183
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	S - 184
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	L - 185
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	Q - 187
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	I - 188
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	E - 189
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	F - 190
1dnl_A_178	1dnl	A	MSESELENOMETHIONINE	W - 191
1h6l_A_35	1h6l	A	CACALCIUM ION	E - 43
1pkh_A_32	1pkh	A	EGLETHYLENE GLYCOL	D - 33
1pkh_A_32	1pkh	A	EGLETHYLENE GLYCOL	T - 35

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h6l_A_35	1h6l	A	AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN A	E - 43

Clusters included in this Subclass

CLUSTER: AR.2.35

CLUSTER: AR.3.35