Information on SUBCLASS 5.13.1 |
Subclass Accession number: 1891
Subclass: 5.13.1 Type: AR beta-beta link DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 24 (>75 %) 3 (>75 %) 3.4.24 (>75 %) 3.4.24.404 (>75 %) GO : GO:0004222 (>75 %) GO:0008237 (>75 %) GO:0008270 (>75 %) SCOP : 51120 (>75 %) 51121 (>75 %) 51125 (>75 %) |
Number of loops: 10 Average sequence ID (%) : 12.0 +/- 15.2 Average RMSD (Å) : 1.020 +/- 0.266 Consensus geometry
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Consensus Sequence: | phXXcpXhh |
(φψ)-conformation: | bbpplppbb |
Pattern: | x | x | [adeknrst] | x | x | [ekp] | [dgns] | x | x | [AGILTV] | [acgn] | x |
Conservation: | -1.000 | -1.000 | -0.599 | 0.368 | -1.716 | 1.105 | 1.638 | -0.556 | -1.048 | 0.119 | 0.358 | 0.330 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bdo_*_108 | 1bdo | - | 108 | 117 | ..KVNVGDTLCI | ..EE-TT-EEEE | ..xbbpvxxabb |
1brw_A_387 | 1brw | A | 387 | 396 | ..RVQKGEALAT | ..EE-TT-EEEE | ..xbbpvxxabb |
1dpj_A_202 | 1dpj | A | 202 | 213 | EYAELESHGAAI | EEEE-SS-EEEE | bbbxbblxbbxx |
1e0t_A_150 | 1e0t | A | 150 | 159 | .GDLGENKGVN. | .EEE-SS-EEE. | .bxxxxvxxbb. |
1g24_A_188 | 1g24 | A | 191 | 202 | KFKVAKGSKAGY | EEEE-TT-B-EE | bxxbxpvxxbbx |
1giq_A_354 | 1giq | A | 357 | 368 | RINIPKDSPGAY | EEEE-TT-S-EE | bbxbxpvxxebx |
1je5_A_11 | 1je5 | A | 11 | 21 | .GTAEPYAYIAK | .EEE-SS-EEEE | .bbxxxvxbaab |
1ojq_A_152 | 1ojq | A | 155 | 166 | KLELPKGTKAAY | EEEE-TT-B-EE | bbxxxpvxxbbx |
1rkd_*_87 | 1rkd | - | 87 | 97 | .VSVIKGESTGV | .EEEETT---EE | .xxbxxvbbxpb |
1sei_A_75 | 1sei | A | 76 | 87 | KRISKPGLRVYV | EE--BTTB--EE | bxaxbpvbxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bdo_*_108 | 1bdo | * | BTNBIOTIN | I - 117 |
1bdo_*_108 | 1bdo | * | BTNBIOTIN | E - 119 |
1dpj_A_202 | 1dpj | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 202 |
1dpj_A_202 | 1dpj | A | NAGN-ACETYL-D-GLUCOSAMINE | Y - 203 |
1rkd_*_87 | 1rkd | * | RIBRIBOSE | V - 97 |
1rkd_*_87 | 1rkd | * | PO4PHOSPHATE ION | V - 97 |
1rkd_*_87 | 1rkd | * | RIBRIBOSE | A - 98 |
1rkd_*_87 | 1rkd | * | RIBRIBOSE | I - 100 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1rkd_*_87 | 1rkd | * | RB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE. | A - 98 |
1rkd_*_87 | 1rkd | * | RB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE. | I - 100 |
Clusters included in this Subclass |
CLUSTER: AR.5.36 |
CLUSTER: AR.6.120 |
CLUSTER: AR.7.56 |