ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.2.3

Subclass Accession number: 7082
Subclass: 1.2.3

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 15

Average sequence ID (%) : 24.5 +/- 22.4
Average RMSD (Å) : 0.493 +/- 0.209

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hXGXX
(φψ)-conformation:	bbeaa

Pattern:	[afikltv]	[ACSV]	[giltv]	[G]	[aknst]	[agknq]	[agqrst]	[dehnpqst]	x	[AILMV]	x	[AEGPST]	[afmv]
Conservation:	-0.413	0.610	-0.228	3.092	-0.164	-0.172	-0.231	-0.608	-0.751	0.248	-0.574	-0.198	-0.612

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e94_A_120	1e94	A	120	132	IAIGSGGPYAQAA	EEEETTHHHHHHH	bbbeaaaaaaaaa
1g3k_A_120	1g3k	A	121	133	LAIGSGGNYALSA	EEESTTHHHHHHH	bbbeaaaaaaaaa
1gg4_A_386	1gg4	A	388	400	LSVGKQSHAISTA	EEESSSTHHHHHH	xbbeaaaaaaaaa
1i74_A_261	1i74	A	265	277	LALGNNTDKVEAA	EEEETTHHHHHHH	bbbeaaaaaaaaa
1iru_J_136	1iru	J	137	149	VVSGTCAEQMYGM	EEEETTHHHHHHH	bbbeaaaaaaaaa
1j2p_A_162	1j2p	A	163	175	TAIGMGRMAVTEF	EEESTTHHHHHHH	bbbeaaaaaaaaa
1j2q_H_123	1j2q	H	124	136	VATGSGSLTAYGV	EEESTTHHHHHHH	bbbeaaaaaaaaa
1k20_A_263	1k20	A	267	279	LAIGSNMDKVEAA	EEEES-HHHHHHH	bbbeaaaaaaaaa
1ryp_1_127	1ryp	1	128	140	RAGGAAASLIMPF	EEEETTHHHHHHH	bbbeaaaaaaaaa
1ryp_A_168	1ryp	A	169	181	TATGPKQQEITTN	EEESTTHHHHHHH	bbbeaaaaaaaaa
1ryp_B_161	1ryp	B	162	174	TAIGKGSVAAKTF	EEESTTHHHHHHH	bbbeaaaaaaaaa
1ryp_E_169	1ryp	E	170	182	KAIGSGSEGAQAE	EEESTTHHHHHHH	bbbeaaaaaaaaa
1ryp_G_161	1ryp	G	162	174	AATGKGRQSAKAE	EEESTTHHHHHHH	bbbeaaaaaaaaa
1ryp_J_127	1ryp	J	128	140	IVSGTASDQLFGM	EEEETTHHHHHHH	bbbeaaaaaaaaa
1ryp_L_126	1ryp	L	127	139	FCVGSGQTFAYGV	EEESTTHHHHHHH	bbbeaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gg4_A_386	1gg4	A	MSESELENOMETHIONINE	V - 390
1gg4_A_386	1gg4	A	MSESELENOMETHIONINE	Q - 393
1gg4_A_386	1gg4	A	MSESELENOMETHIONINE	S - 394
1gg4_A_386	1gg4	A	MSESELENOMETHIONINE	I - 397
1i74_A_261	1i74	A	MSESELENOMETHIONINE	S - 262
1i74_A_261	1i74	A	MSESELENOMETHIONINE	E - 263
1i74_A_261	1i74	A	MSESELENOMETHIONINE	I - 264
1i74_A_261	1i74	A	MSESELENOMETHIONINE	L - 265
1ryp_J_127	1ryp	J	MGMAGNESIUM ION	S - 130
1ryp_J_127	1ryp	J	MGMAGNESIUM ION	G - 131
1ryp_J_127	1ryp	J	MGMAGNESIUM ION	T - 132
1ryp_J_127	1ryp	J	MGMAGNESIUM ION	A - 133
1ryp_J_127	1ryp	J	MGMAGNESIUM ION	S - 134
1ryp_J_127	1ryp	J	MGMAGNESIUM ION	D - 135
1ryp_G_161	1ryp	G	MGMAGNESIUM ION	K - 172

Clusters included in this Subclass

CLUSTER: EH.1.67

CLUSTER: EH.2.40

CLUSTER: EH.3.165

CLUSTER: EH.3.40