Information on SUBCLASS 2.3.9 |
Subclass Accession number: 526
Subclass: 2.3.9 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 6.1 (>75 %) 6.1.1 (>75 %) GO : GO:0003676 (>75 %) GO:0004812 (>75 %) GO:0008452 (>75 %) GO:0016874 (>75 %) GO:0016875 (>75 %) GO:0016876 (>75 %) GO:0016886 (>75 %) |
Number of loops: 7 Average sequence ID (%) : 10.3 +/- 12.4 Average RMSD (Å) : 0.471 +/- 0.243 Consensus geometry
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Consensus Sequence: | XXXcph |
(φψ)-conformation: | bbeabp |
Pattern: | [AFILV] | [fmqy] | x | [EGN] | [DEGKN] | [DEHKQ] | [LPV] | [AILMTV] | [afglmy] | x | [FGLT] | x | [fgipwy] |
Conservation: | 0.859 | 0.373 | -0.777 | 1.453 | 0.732 | 1.263 | 0.599 | 0.562 | -0.909 | -0.769 | -0.718 | -1.103 | -1.566 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a3k_*_145 | 1a3k | - | 149 | 161 | FQRGNDVAFHFNP | EEETTEEEEEEEE | xbbeaxbabbbbw |
1ixl_A_100 | 1ixl | A | 107 | 119 | VYREEEVVLEGKF | EEETTEEEEEEEE | bbbeaxxabbbbb |
1lqv_A_24 | 1lqv | A | 31 | 43 | ASLGGHLTHVLEG | EEETTEEEEEEEE | bbbeabxabbbbe |
1n67_A_297 | 1n67 | A | 297 | 309 | IMAGDQVLANGVI | EEETTEEEEEEEE | xbbeabxabbbbx |
1o91_A_658 | 1o91 | A | 677 | 689 | LFKNNEPMMYTYD | EEETTEEEEEEEE | xbbeabxabbbbb |
1q2y_A_43 | 1q2y | A | 47 | 59 | VYDGEKPVGAGRW | EEETTEEEEEEEE | bbbeaxwabbbbb |
1vdw_A_100 | 1vdw | A | 105 | 117 | IFHEKDPIYAFIY | EEETTEEEEEEEE | bbxeabwabbbbe |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a3k_*_145 | 1a3k | * | GALD-GALACTOSE | H - 158 |
1a3k_*_145 | 1a3k | * | GALD-GALACTOSE | N - 160 |
1a3k_*_145 | 1a3k | * | GALD-GALACTOSE | R - 162 |
1a3k_*_145 | 1a3k | * | NAGN-ACETYL-D-GLUCOSAMINE | R - 162 |
1ixl_A_100 | 1ixl | A | MSESELENOMETHIONINE | C - 121 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | Q - 28 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | G - 29 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | G - 29 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 30 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | N - 30 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | A - 31 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 37 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | H - 39 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 40 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | V - 40 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | L - 41 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1o91_A_658 | 1o91 | A | SO4SO4 BINDING SITE FOR CHAIN C | Y - 661 |
1o91_A_658 | 1o91 | A | SO4SO4 BINDING SITE FOR CHAIN C | A - 663 |
Clusters included in this Subclass |
CLUSTER: HA.3.51 |