Information on SUBCLASS 4.1.11 |
Subclass Accession number: 7876
Subclass: 4.1.11 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 12.6 +/- 13.3 Average RMSD (Å) : 0.700 +/- 0.187 Consensus geometry
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Consensus Sequence: | XDXppXXX |
(φψ)-conformation: | bbaaalbb |
Pattern: | x | x | x | [ctvy] | [art] | [FTVY] | [DN] | x | [DQS] | [KT] | [dkqw] | x | x | x | x | x | x | x | [LV] |
Conservation: | -0.720 | -0.291 | -0.528 | -0.588 | -0.064 | 0.158 | 2.941 | -0.785 | 1.143 | 1.177 | -0.555 | -0.172 | -0.720 | -0.456 | -0.752 | -0.752 | 0.038 | -0.577 | 1.502 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cru_A_112 | 1cru | A | 116 | 134 | IRRYTYNKSTDTLEKPVDL | EEEEEEETTTTEEEEEEEE | xbbbbxbaaalbbblwbxa |
1fwx_A_163 | 1fwx | A | 165 | 183 | NVFTAVDADKWEVAWQVLV | EEEEEEETTTTEEEEEEEE | bbbbbxxaaalbxabbbxb |
1gk8_I_104 | 1gk8 | I | 105 | 123 | VRLVAFDNQKQVQIMGFLV | EEEEEEETTTTEEEEEEEE | bbxbbbbaaalbxabbbxa |
1oal_A_2 | 1oal | A | 3 | 21 | LTVKMTDLQTGKPVGTIEL | EEEEEEETTT--EEEEEEE | bbbxbbxaaavxxaebbxb |
1uca_A_148 | 1uca | A | 148 | 166 | GLRCRTDPQTKVSYLVQVV | EEEEEE-TTT--EEEEEEE | bbbbbxxaaavxxbxabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1cru_A_112 | 1cru | A | GOLGLYCEROL | D - 126 |
Clusters included in this Subclass |
CLUSTER: HA.5.63 |