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Information on SUBCLASS 5.25.1
Subclass Accession number: 6404
Subclass: 5.25.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 14.6 +/- 24.6
Average RMSD (Å) : 0.860 +/- 0.472

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: hhXppppXh
(φψ)-conformation: bpaapaabb
Pattern: xx[lmv][dp]x[EFHR][DS][KTV][HST]x[FGTV][fgvy]x
Conservation:-1.000-1.0000.1380.353-0.7220.1172.1010.7400.956-0.796-0.807-1.055-1.025
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amx_*_1741amx   -178190GDMLPEDTTHVRWEE--TT-TTEEEEbbbxaabaabbxb
1feh_A_1331feh   A133143..VDERSKSLTVD..EE--SSSEEEE..bbaaxaabbbb
1jwy_A_5691jwy   A569581YEEPRFSKTEFGVEE--SS-SSEEEEbbxxaapaabbbb
1miq_A_1531miq   A156168FYLPVHDVHAGYLEE--TT-TTEEEEbbbpaabaabbbb
1pfz_A_1531pfz   A156168FYLPVHDKHTGFLEE--TT-TTEEEEbbbpaabaabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1feh_A_1331feh   A     FS4IRON/SULFUR CLUSTER L - 140
1feh_A_1331feh   A     FS4IRON/SULFUR CLUSTER V - 142
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1amx_*_1741amx   * CBRCOLLAGEN-BINDING RESIDUES IDENTIFIED BY SITE-DIRECTED MUTAGENESIS.Y - 175
1amx_*_1741amx   * CBRCOLLAGEN-BINDING RESIDUES IDENTIFIED BY SITE-DIRECTED MUTAGENESIS.R - 189
1amx_*_1741amx   * CBRCOLLAGEN-BINDING RESIDUES IDENTIFIED BY SITE-DIRECTED MUTAGENESIS.F - 191
1amx_*_1741amx   * CBRCOLLAGEN-BINDING RESIDUES IDENTIFIED BY SITE-DIRECTED MUTAGENESIS.N - 193

Clusters included in this Subclass
CLUSTER: HA.6.84