Information on SUBCLASS 3.4.6 |
Subclass Accession number: 8334
Subclass: 3.4.6 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 12.4 +/- 15.1 Average RMSD (Å) : 0.820 +/- 0.303 Consensus geometry
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Consensus Sequence: | pXcXphh |
(φψ)-conformation: | aalppbb |
Pattern: | [AGKV] | [aes] | [ael] | x | x | x | x | [LV] | x | [DKNPR] | [efkr] | [DGNR] | x | x | [AFLPV] | [HLVY] | x |
Conservation: | -0.319 | -0.256 | -0.474 | 0.091 | 0.159 | -0.282 | -0.278 | 3.075 | -0.238 | 0.039 | -0.923 | 0.873 | -0.648 | 0.582 | -0.923 | 0.891 | -1.372 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d6j_A_38 | 1d6j | A | 43 | 59 | VELEHQLVRDRRVHAYR | HHHHHHHHTTS---EEE | aaaaaaaaaaalbxbbx |
1i8t_A_11 | 1i8t | A | 13 | 29 | GAVCANELKKLNKKVLV | HHHHHHHHGGGT--EEE | aaaaaaaaaaavxxbbb |
1j0a_A_133 | 1j0a | A | 137 | 153 | AEEIAEELKREGRKPYV | HHHHHHHHTTSS--EEE | aaaaaaaaaaaGpbbbb |
1knx_A_160 | 1knx | A | 160 | 176 | KSECALDLINKNHLFVG | HHHHHHHHHTTT-EEEE | aaaaaaaaaaavxxbab |
2nac_A_201 | 2nac | A | 203 | 219 | GLAVLRRLAPFDVHLHY | HHHHHHHHGGGT-EEEE | aaaaaaaaaaavxxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1d6j_A_38 | 1d6j | A | TARD(-)-TARTARIC ACID | K - 38 |
1d6j_A_38 | 1d6j | A | TARD(-)-TARTARIC ACID | S - 39 |
1d6j_A_38 | 1d6j | A | TARD(-)-TARTARIC ACID | R - 59 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | L - 11 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | F - 12 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | G - 13 |
1i8t_A_11 | 1i8t | A | FADFLAVIN-ADENINE DINUCLEOTIDE | I - 30 |
Clusters included in this Subclass |
CLUSTER: HE.5.168 |
CLUSTER: HE.6.136 |
CLUSTER: HE.7.107 |