Information on SUBCLASS 4.8.1 |
Subclass Accession number: 292
Subclass: 4.8.1 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 2.4 (>75 %) 2.4.1 (>75 %) 2.4.1.14.4 (>50 %) 4.4.1 (>50 %) GO : GO:0016829 (>50 %) GO:0016846 (>50 %) SCOP : 53382 (>75 %) 53383 (>75 %) 53402 (>75 %) 53755 (>75 %) 53756 (>75 %) 53766 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 26.7 +/- 17.3 Average RMSD (Å) : 0.533 +/- 0.153 Consensus geometry
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Consensus Sequence: | XhhpXXTX |
(φψ)-conformation: | aapbaapa |
Pattern: | [L] | [EP] | [AQT] | [AL] | [FIM] | [DT] | [EPQ] | [ADK] | [T] | [AR] | [LV] | [ILV] | [AMY] | [FIL] | [ET] |
Conservation: | 1.522 | 0.621 | -1.060 | -0.540 | -0.365 | 0.267 | -0.365 | -1.357 | 2.415 | -0.142 | 0.284 | 0.330 | -1.258 | -0.265 | -0.087 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gc0_A_140 | 1gc0 | A | 143 | 157 | LEAAMTPATRVIYFE | HHHH--TTEEEEEEE | aaaaxbaaxabbbbb |
1jf9_A_157 | 1jf9 | A | 157 | 171 | LPTLFDEKTRLLAIT | HHHH--TTEEEEEEE | aaaaxbaaxabbbbx |
1qz9_A_158 | 1qz9 | A | 158 | 172 | LPQAIDQDTAVVMLT | HHHH-STTEEEEEEE | aaaaxbaaxabbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gc0_A_140 | 1gc0 | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | Y - 155 |
1gc0_A_140 | 1gc0 | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | E - 157 |
1jf9_A_157 | 1jf9 | A | PLPPYRIDOXAL-5'-PHOSPHATE | T - 171 |
1qz9_A_158 | 1qz9 | A | PLPPYRIDOXAL-5'-PHOSPHATE | T - 172 |
Clusters included in this Subclass |
CLUSTER: HE.3.123 |