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Information on SUBCLASS 5.3.2
Subclass Accession number: 354
Subclass: 5.3.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003676 (>75 %)  
 Number of loops: 6

Average sequence ID (%) : 14.0 +/- 14.3
Average RMSD (Å) : 1.183 +/- 0.194

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXcXXhpXh
(φψ)-conformation: aalbbpabb
Pattern: [degt][kqrt][aflvy][fikmt]xx[mvwy]x[egnrs][EKL][GN]x[AKV][PY][DHKT]x[FHMVWY][ailv]x
Conservation:-0.6320.052-0.559-0.559-0.566-0.5700.016-0.580-0.8830.3053.137-0.1600.2221.6460.600-0.9480.2510.272-1.045
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8h_*_761a8h   -7694GRFKRAWDLLGIAYDDFIRHHHHHHHHHTT---SEEEEaaaaaaaaaavxbxabbxb
1f7u_A_2601f7u   A275293EKYIDTYARLNIKYDVYSGHHHHHHHHHTT---SEEEEaaaaaaaaaalbbxabbxe
1jye_A_2221jye   A226244FQQTMQMLNEGIVPTAMLVHHHHHHHHHTT---SEEEEaaaaaaaaaavxbxabbbb
1jyh_A_221jyh   A3149EQLMMWVDSKNIVPKEWVAHHHHHHHHHTT---SEEEEaaaaaaaaaalxbxabbbb
1l5x_A_701l5x   A7290DTVYLATFGLGRKYDIVLSHHHHHHHHHHTS--SEEEEaaaaaaaaaavbxxabbbb
1v7c_A_1661v7c   A166184TLAFEVVDELGDAPHYHALHHHHHHHHHHSS--SEEEEaaaaaaaaaavbxxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1l5x_A_701l5x   A     MSESELENOMETHIONINE L - 76
1l5x_A_701l5x   A     GOLGLYCEROL L - 76
1l5x_A_701l5x   A     MSESELENOMETHIONINE A - 77
1l5x_A_701l5x   A     GOLGLYCEROL A - 77
1l5x_A_701l5x   A     GOLGLYCEROL T - 78
1l5x_A_701l5x   A     MSESELENOMETHIONINE F - 79
1l5x_A_701l5x   A     MSESELENOMETHIONINE G - 80
1l5x_A_701l5x   A     GOLGLYCEROL G - 80
1l5x_A_701l5x   A     GOLGLYCEROL L - 81
1l5x_A_701l5x   A     GOLGLYCEROL Y - 85
1l5x_A_701l5x   A     MSESELENOMETHIONINE D - 86
1l5x_A_701l5x   A     MSESELENOMETHIONINE I - 92
1v7c_A_1661v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID P - 185

Clusters included in this Subclass
CLUSTER: HE.5.67