Information on SUBCLASS 5.4.2 |
Subclass Accession number: 8563
Subclass: 5.4.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 7.9 +/- 9.5 Average RMSD (Å) : 1.214 +/- 0.313 Consensus geometry
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Consensus Sequence: | XXXXXXpXh |
(φψ)-conformation: | aalbppabb |
Pattern: | [acpst] | x | [DEKNQ] | [AKMTV] | [ALMVY] | x | x | x | x | [aenqr] | [adegkr] | x | [EGNR] | x | [cdkqr] | x | [DHKNQ] | x | [filvy] | x |
Conservation: | 0.126 | -0.124 | 2.204 | 0.508 | 1.137 | -0.360 | -1.073 | -0.499 | -1.163 | -0.588 | -0.797 | 0.141 | 1.818 | -0.740 | -0.155 | -0.548 | 1.700 | -0.874 | 0.186 | -0.901 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bu6_O_373 | 1bu6 | O | 388 | 407 | TRDVLEAMQADSGIRLHALR | HHHHHHHHHHHH----SEEE | aaaaaaaaaaaavbbxabbx |
1f7u_A_260 | 1f7u | A | 273 | 292 | SIEKYIDTYARLNIKYDVYS | HHHHHHHHHHHTT---SEEE | aaaaaaaaaaaalbbxabbx |
1gqv_A_23 | 1gqv | A | 23 | 42 | CTNAMQVINNYQRRCKNQNT | HHHHHHHHHHHHTS--SEEE | aaaaaaaaaaaavbxxabbb |
1ig3_A_120 | 1ig3 | A | 124 | 143 | CLQVLQRKIEEKELQVDVIV | HHHHHHHHHHHTT---SEEE | aaaaaaaaaaaalxbbabbx |
1k1x_A_95 | 1k1x | A | 101 | 120 | QIEMLKDYARKLGYDAKGVW | HHHHHHHHHHHTT----EEE | aaaaaaaaaaaavbxpabbx |
1l5x_A_70 | 1l5x | A | 70 | 89 | PSDTVYLATFGLGRKYDIVL | HHHHHHHHHHHHTS--SEEE | aaaaaaaaaaaavbxxabbb |
1qj5_A_112 | 1qj5 | A | 119 | 138 | AMKMALQYWQAKGEARQRFL | HHHHHHHHHHHTT----EEE | aaaaaaaaaaaavbxbaxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gqv_A_23 | 1gqv | A | ACTACETATE ION | L - 44 |
1ig3_A_120 | 1ig3 | A | VIB3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY -ETHYL)-4-METHYL-THIAZOL-3-IUM | D - 120 |
1ig3_A_120 | 1ig3 | A | VIB3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY -ETHYL)-4-METHYL-THIAZOL-3-IUM | K - 123 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | L - 76 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | L - 76 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | A - 77 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | A - 77 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | T - 78 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | F - 79 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | G - 80 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | G - 80 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | L - 81 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | Y - 85 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | D - 86 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | I - 92 |
1qj5_A_112 | 1qj5 | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 112 |
1qj5_A_112 | 1qj5 | A | PLPPYRIDOXAL-5'-PHOSPHATE | S - 113 |
1qj5_A_112 | 1qj5 | A | PLPPYRIDOXAL-5'-PHOSPHATE | V - 114 |
1qj5_A_112 | 1qj5 | A | PLPPYRIDOXAL-5'-PHOSPHATE | V - 116 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gqv_A_23 | 1gqv | A | P-1P-1 PERIPHERAL SUBSITE FOR CHAIN A | R - 36 |
1gqv_A_23 | 1gqv | A | P1P1 CAYALYTIC SUBSITE FOR CHAIN A | K - 38 |
1gqv_A_23 | 1gqv | A | P-1P-1 PERIPHERAL SUBSITE FOR CHAIN A | N - 39 |
1gqv_A_23 | 1gqv | A | P-1P-1 PERIPHERAL SUBSITE FOR CHAIN A | Q - 40 |
Clusters included in this Subclass |
CLUSTER: HE.5.75 |