ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 7.5.1

Subclass Accession number: 5008
Subclass: 7.5.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 7

Average sequence ID (%) : 31.7 +/- 25.5
Average RMSD (Å) : 0.557 +/- 0.207

Consensus geometry

d (Å): 23

delta (°): 90-135

theta (°): 45-90

rho (°): 0-45

Consensus Sequence:	pLGWphXXXhp
(φψ)-conformation:	aalpbpappaa

Pattern:	[KLT]	[ai]	[akqs]	[EHQR]	x	[L]	[GN]	[CW]	[kty]	[hp]	[aeqr]	x	[AGST]	[FL]	[DE]	[AEKRS]	[GLM]	[CILMV]	[AEKR]	x	[LMT]	[VWY]	[DEHQR]	[aw]	[dqy]	[KLV]	[AEQR]
Conservation:	-0.376	-0.637	-0.825	0.084	-0.491	1.659	1.609	3.452	-0.855	0.099	-0.803	-0.835	-0.288	0.553	1.464	-0.519	-0.936	-0.030	-0.112	-0.846	-0.075	-0.244	-0.099	0.228	-0.750	-0.236	-0.190

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bxk_A_306	1bxk	A	307	333	KIARELGCVPQETFESGMRKTVQWYLA	HHHHHT-------HHHHHHHHHHHHHH	aaaaaavxbpabbaaaaaaaaaaaaaa
1e6u_A_288	1e6u	A	288	314	TRLHQLGWYHEISLEAGLASTYQWFLE	HHHHHTT------HHHHHHHHHHHHHH	aaaaaavbbxabxaaaaaaaaaaaaaa
1ek6_A_312	1ek6	A	313	339	LAQEELGWTAALGLDRMCEDLWRWQKQ	HHHHTT-------HHHHHHHHHHHHHH	aaaaaavbbxaxxaaaaaaaaaaaaaa
1kew_A_309	1kew	A	310	336	KISRELGWKPLETFESGIRKTVEWYLA	HHHHHH----S--HHHHHHHHHHHHHH	aaaaaavxbxaxbaaaaaaaaaaaaaa
1n7h_A_326	1n7h	A	327	353	KAKEVLGWKPQVGFEKLVKMMVDEDLE	HHHHHH-----S-HHHHHHHHHHHHHH	aaaaaavxbxaxxaaaaaaaaaaaaaa
1rpn_A_291	1rpn	A	292	318	KAQRVLGWKPRTSLDELIRMMVEADLR	HHHHHH-----S-HHHHHHHHHHHHHH	aaaaaavxbxaxxaaaaaaaaaaaaaa
1t2a_A_337	1t2a	A	338	364	KAKQKLNWKPRVAFDELVREMVHADVE	HHHHHH-----S-HHHHHHHHHHHHHH	aaaaaavxbxaxxaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e6u_A_288	1e6u	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	W - 311
1ek6_A_312	1ek6	A	TMATETRAMETHYLAMMONIUM ION	E - 316
1ek6_A_312	1ek6	A	TMATETRAMETHYLAMMONIUM ION	E - 317
1ek6_A_312	1ek6	A	TMATETRAMETHYLAMMONIUM ION	L - 318
1ek6_A_312	1ek6	A	TMATETRAMETHYLAMMONIUM ION	G - 319
1kew_A_309	1kew	A	GOLGLYCEROL	K - 310
1kew_A_309	1kew	A	GOLGLYCEROL	E - 321
1kew_A_309	1kew	A	GOLGLYCEROL	T - 322
1kew_A_309	1kew	A	GOLGLYCEROL	F - 323
1kew_A_309	1kew	A	GOLGLYCEROL	E - 324

Clusters included in this Subclass