Information on SUBCLASS 8.1.2 |
Subclass Accession number: 5029
Subclass: 8.1.2 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003700 (>75 %) GO:0003707 (>75 %) GO:0004872 (>75 %) GO:0004879 (>75 %) GO:0005496 (>50 %) SCOP : 48507 (>75 %) 48508 (>75 %) 48509 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 44.4 +/- 15.9 Average RMSD (Å) : 0.400 +/- 0.000 Consensus geometry
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Consensus Sequence: | pXhPGFXcLXXX |
(φψ)-conformation: | aappgaaappaa |
Pattern: | x | [IV] | x | [GK] | [W] | [AS] | [EK] | [AKS] | [IL] | [P] | [G] | [F] | [AR] | [DN] | [L] | [HP] | [IKV] | [AD] | [D] | [Q] | x | [ALT] | [LV] | [FI] | [EQ] | [SY] | [AS] | [FW] | [LM] | [EGS] | [L] | [FM] | [V] | [FL] | [AGR] | [LM] | [AG] | [WY] | [R] |
Conservation: | -1.337 | 0.110 | -1.196 | -0.724 | 3.650 | -0.313 | -0.117 | -0.865 | -0.123 | 1.760 | 1.288 | 1.288 | -0.675 | 0.123 | 0.343 | -0.190 | -1.075 | -0.760 | 1.288 | 0.815 | -1.284 | -1.075 | -0.316 | -0.405 | 0.116 | -0.613 | -0.356 | 0.859 | 0.024 | -0.970 | 0.343 | -0.258 | 0.343 | -0.295 | -1.075 | -0.033 | -0.295 | 1.184 | 0.815 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a28_A_711 | 1a28 | A | 728 | 766 | SVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWR | HHHHHHHHSTTGGGS-HHHHHHHHHHHHHHHHHHHHHHH | aaaaaaaaxpgaaaxpaaaaaaaaaaaaaaaaaaaaaaa |
1gs4_A_697 | 1gs4 | A | 714 | 752 | HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWR | HHHHHHHTSTTGGGS-HHHHHHHHHHHHHHHHHHHHHHH | aaaaaaaaxpvaaaxpaaaaaaaaaaaaaaaaaaaaaaa |
1ovl_E_416 | 1ovl | E | 416 | 454 | IIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYR | HHHHHHHTSTTSTTS-HHHHHHHHHHHHHHHHHHHHHHH | aaaaaaaaxpvaaaxpaaaaaaaaaaaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gs4_A_697 | 1gs4 | A | AC2PO4 BINDING SITE FOR CHAIN A | F - 697 |
1gs4_A_697 | 1gs4 | A | AC1ZK5 BINDING SITE FOR CHAIN A | H - 701 |
1gs4_A_697 | 1gs4 | A | AC1ZK5 BINDING SITE FOR CHAIN A | L - 704 |
1gs4_A_697 | 1gs4 | A | AC1ZK5 BINDING SITE FOR CHAIN A | Q - 711 |
1gs4_A_697 | 1gs4 | A | AC1ZK5 BINDING SITE FOR CHAIN A | R - 752 |
Clusters included in this Subclass |
CLUSTER: HH.9.70 |