ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.3.1

Subclass Accession number: 124
Subclass: 3.3.1
Type: HE alpha-beta
DB: ArchDB-KI

Number of loops: 6

Average sequence ID (%) : 8.8 +/- 0.7
Average RMSD (Å) : 1.00 +/- 0.47

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XXXXXXX
(φψ)-conformation:	aalppbb

Pattern:	x	x	{AEKL}	x	x	{AEKL}	[AGL]	x	x	x	x	x	x	x	x	[CGLV]
Conservation:	-1.863	0.527	-1.232	0.708	0.176	0.470	1.247	-1.933	0.603	-0.035	-0.082	-1.019	1.191	0.524	-0.049	0.764

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bdg_*_185	1bdg	-	187	202	ELLQTELDKRELNVKC	HHHHHHHHTTT--EEE	aaaaaaaaaalxxbab
1e9e_A_19	1e9e	A	24	39	RKLVEALCAAGHRAEL	HHHHHHHHHTT--EEE	aaaaaaaaaavxxbbb
1ex7_A_101	1ex7	A	103	118	GVKSVKAIPELNARFL	HHHHHHT-GGG--EEE	aaaaaaabaaalxbbb
1gc5_A_121	1gc5	A	124	139	IMANLLGGVYRIPTIV	HHHHHHHHTS---EEE	aaaaaaaaaavxpbbb
1kbl_A_411	1kbl	A	411	426	ADEAKAAHEKGERVIL	HHHHHHHHHTT--EEE	aaaaaaaaaavxxbbx
1pfk_A_103	1pfk	A	106	121	YMGAMRLTEMGFPCIG	HHHHHHHHHTT--EEE	aaaaaaaaaagx-bbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1pfk_A_103	1pfk	A	FBPFRUCTOSE-1,6-DIPHOSPHATE	D - 103
1pfk_A_103	1pfk	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 103
1pfk_A_103	1pfk	A	MGMAGNESIUM ION	D - 103
1pfk_A_103	1pfk	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 104
1pfk_A_103	1pfk	A	MGMAGNESIUM ION	G - 104
1pfk_A_103	1pfk	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 105
1pfk_A_103	1pfk	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 106
1pfk_A_103	1pfk	A	ADPADENOSINE-5'-DIPHOSPHATE	M - 107
1pfk_A_103	1pfk	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 108
1pfk_A_103	1pfk	A	ADPADENOSINE-5'-DIPHOSPHATE	A - 109
1pfk_A_103	1pfk	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 111

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e9e_A_19	1e9e	A	ADPADP BINDING SITE	K - 19
1e9e_A_19	1e9e	A	ADPADP BINDING SITE	S - 20
1e9e_A_19	1e9e	A	ADPADP BINDING SITE	T - 21

Clusters included in this Subclass

CLUSTER: HE.4.15

CLUSTER: HE.6.9