Information on SUBCLASS 5.1.1 |
Subclass Accession number: 132
Subclass: 5.1.1 Type: HE alpha-beta DB: ArchDB-KI |
Number of loops: 11 Average sequence ID (%) : 26.1 +/- 6.4 Average RMSD (Å) : 1.03 +/- 0.41 Consensus geometry
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Consensus Sequence: | pXhXphpXh |
(φψ)-conformation: | aagbppabb |
Pattern: | x | x | x | x | x | {AELM} | [FLM] | [AEK] | [DEKRT] | x | x | x | {EKNQR} | {LPV} | [DEKT] | x | [AFILV] | [IL] | x | [FILV] | [DKS] |
Conservation: | -0.684 | -0.747 | 0.478 | -0.123 | -0.760 | -0.513 | 1.166 | 1.127 | 0.129 | -1.285 | -1.287 | -1.395 | 0.106 | -0.703 | 0.891 | -0.733 | 0.300 | 2.031 | -0.543 | 0.819 | 1.724 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ak2_*_106 | 1ak2 | - | 110 | 130 | EMLDDLMEKRKEKLDSVIEFS | HHHHHHHHHHT----EEEEEE | aaaaaaaaaavbbxabbxbxx |
1ake_A_90 | 1ake | A | 90 | 110 | IPQADAMKEAGINVDYVLEFD | HHHHHHHHHTT---SEEEEEE | aaaaaaaaaavbxbabbbbbx |
1aky_*_95 | 1aky | - | 99 | 119 | EKLDQMLKEQGTPLEKAIELK | HHHHHHHHHHT----EEEEEE | aaaaaaaaaavb-xabbxxxx |
1ank_A_90 | 1ank | A | 90 | 110 | IPQADAMKEAGINVDYVLEFD | HHHHHHTTTTT---SEEEEEE | aaaaaaaaaNvxxbabbxxxx |
1dvr_A_95 | 1dvr | A | 99 | 119 | EKLDQMLKEQGTPLEKAIELK | HHHHHHHHHHT---SEEEEEE | aaaaaaaaaagbxpabbbbxb |
1uky_*_109 | 1uky | - | 109 | 129 | MDQAISFERDIVESKFILFFD | HHHHHHHHHHT---SEEEEEE | aaaaaaaaaaabxxabbxbxx |
1ukz_*_109 | 1ukz | - | 109 | 129 | MDQAISFERDIVESKFILFFD | HHHHHHHHHHT---SEEEEEE | aaaaaaaaaaabxxabbbbxx |
1zak_A_96 | 1zak | A | 96 | 116 | YSQAMALETLEIRPDTFILLD | HHHHHHHHTTT---SEEEEEE | aaaaaaaaaavbbxabbxbxx |
1zip_*_90 | 1zip | - | 94 | 114 | EALETMLADIGRKLDYVIHID | HHHHHHHHTTT----EEEEEE | aaaaaaaaaavbbxabbxxxx |
2eck_A_90 | 2eck | A | 90 | 110 | IPQADAMKEAGINVDYVLEFD | HHHHHHHHHTT---SEEEEEE | aaaaaaaaaavxxbabbbxxx |
3adk_*_99 | 3adk | - | 99 | 119 | VKQGEEFERKIGQPTLLLYVD | HHHHHHHHHHT---SEEEEEE | aaaaaaaaaaabxxabbxbxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ake_A_90 | 1ake | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | Q - 92 |
1aky_*_95 | 1aky | * | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | Q - 97 |
1aky_*_95 | 1aky | * | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | L - 118 |
1ank_A_90 | 1ank | A | AMPADENOSINE MONOPHOSPHATE | Q - 92 |
1dvr_A_95 | 1dvr | A | ATFPHOSPHODIFLUOROMETHYLPHOSPHONIC ACID-ADENYLATE ESTER | L - 118 |
1uky_*_109 | 1uky | * | ADPADENOSINE-5'-DIPHOSPHATE | Q - 111 |
1ukz_*_109 | 1ukz | * | AMPADENOSINE MONOPHOSPHATE | Q - 111 |
1zak_A_96 | 1zak | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | Q - 98 |
1zak_A_96 | 1zak | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | L - 115 |
1zip_*_90 | 1zip | * | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | Q - 92 |
2eck_A_90 | 2eck | A | AMPADENOSINE MONOPHOSPHATE | Q - 92 |
Bibliographic annotations |
Clusters included in this Subclass |
CLUSTER: HE.5.22 |
CLUSTER: HE.6.11 |
CLUSTER: HE.8.3 |