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Information on SUBCLASS 2.3.10
Subclass Accession number: 2228
Subclass: 2.3.10 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005529 (>75 %)  GO:0030246 (>75 %)  
SCOP : 51350 (>75 %)  51445 (>75 %)  51534 (>75 %)  
 Number of loops: 5

Average sequence ID (%) : 7.5 +/- 10.8
Average RMSD (Å) : 0.620 +/- 0.319

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: pXhXhp
(φψ)-conformation: aabpaa
Pattern: [pvy][AKNQR][ILV][AEQR][ekry][fhkm][FGLTV][GPT][fil][ekny][EGKQR][aiv]
Conservation:-0.4730.1972.4390.734-0.751-0.950-1.2000.7900.071-0.7010.247-0.404
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j1u_A_1121j1u   A119130YRLALKTTLKRAHHHHHHS-HHHHaaaaaabxaaaa
1m6y_A_1801m6y   A185196KAVREALPSYEIHHHHHHS-HHHHaaaaaabxaaaa
1n62_C_1041n62   C104115PQIRYMGTIGGNHHHHHH-BHHHHaaaaaaxbaaaa
1r6t_A_2471r6t   A252263VKIQKHVTFNQVHHHHHT--HHHHaaaaaabxaaaa
1us5_A_2801us5   A280291PNLERFFGLEKAHHHHHH--HHHHaaaaaaxbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j1u_A_1121j1u   A     MGMAGNESIUM ION D - 113
1j1u_A_1121j1u   A     MGMAGNESIUM ION N - 117
1j1u_A_1121j1u   A     MGMAGNESIUM ION R - 120
1m6y_A_1801m6y   A     MSESELENOMETHIONINE T - 180
1m6y_A_1801m6y   A     MSESELENOMETHIONINE L - 183
1n62_C_1041n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE I - 106
1n62_C_1041n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE M - 109
1n62_C_1041n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE G - 110
1n62_C_1041n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE T - 111
1n62_C_1041n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE I - 112
1n62_C_1041n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE G - 113
1n62_C_1041n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE G - 114
1n62_C_1041n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE N - 115
1n62_C_1041n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE A - 117
1r6t_A_2471r6t   A     MSESELENOMETHIONINE F - 247
1r6t_A_2471r6t   A     MSESELENOMETHIONINE Y - 248
1r6t_A_2471r6t   A     MSESELENOMETHIONINE V - 251
1r6t_A_2471r6t   A     GOLGLYCEROL K - 253
1r6t_A_2471r6t   A     MSESELENOMETHIONINE I - 254
1r6t_A_2471r6t   A     GOLGLYCEROL H - 257
1r6t_A_2471r6t   A     MSESELENOMETHIONINE V - 258
1r6t_A_2471r6t   A     MSESELENOMETHIONINE V - 263
1r6t_A_2471r6t   A     MSESELENOMETHIONINE I - 266
1r6t_A_2471r6t   A     MSESELENOMETHIONINE F - 267

Clusters included in this Subclass
CLUSTER: HH.2.137
CLUSTER: HH.3.262