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Information on SUBCLASS 3.2.8
Subclass Accession number: 2282
Subclass: 3.2.8 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003913 (>75 %)  GO:0005102 (>75 %)  GO:0016829 (>75 %)  GO:0016830 (>75 %)  
SCOP : 48172 (>75 %)  48173 (>75 %)  48174 (>75 %)  56836 (>75 %)  56849 (>75 %)  56850 (>75 %)  
 Number of loops: 6

Average sequence ID (%) : 17.7 +/- 26.0
Average RMSD (Å) : 0.650 +/- 0.327

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pXGhphp
(φψ)-conformation: aalppaa
Pattern: xxx[avy]x[ftv][akl][CTVY][kmv][DENQT]x[GIL][afi][DPS][ivw][DER][ekrw][GIV][aefm][EQR][afiwy][AFIL][emry]
Conservation:-0.794-0.217-0.546-0.059-0.658-0.535-0.3260.452-0.4790.878-0.8320.679-0.7781.948-0.4691.656-0.657-0.147-0.9942.771-0.5470.532-0.879
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dnp_A_3411dnp   A345367MITASFLVKDLLIDWREGERYFMHHHHHHHHHTS---HHHHHHHHHaaaaaaaaaaalxpaaaaaaaaa
1np7_A_3551np7   A359381QNVASFLCKNLGIDWRWGAEWFEHHHHHHHHHTT-B-HHHHHHHHHaaaaaaaaaaavxpaaaaaaaaa
1owl_A_3491owl   A353375MIVASFLTKDLIIDWRRGEQFFMHHHHHHHHHTS---THHHHHHHHaaaaaaaaaaalbpaaaaaaaaa
1p8c_A_601p8c   A6385IRYHLVRCVQEGASDEEIFEALDHHHHHHHHHTTS--HHHHHHHHHaaaaaaaaaaagpbaaaaaaaaa
1riq_A_3801riq   A380402GKEVFTAYDTYGFPVDLIDEIARHHHHHHHHHTS---HHHHHHHHHaaaaaaaaaaavxwaaaaaaaaa
1uok_*_3861uok   -389411LNMYKEKVMERGEDIEKVMQSIYHHHHHHHHHTS---HHHHHHHHHaaaaaaaaaaavxxaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 341
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 342
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 344
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 345
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 348
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 366
1dnp_A_3411dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 367
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 355
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 356
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 358
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 359
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 362
1np7_A_3551np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 380
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 349
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 350
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 352
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 353
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 356
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 374
1owl_A_3491owl   A     PO4PHOSPHATE ION M - 375
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 375
1riq_A_3801riq   A     MSESELENOMETHIONINE Y - 390
1riq_A_3801riq   A     MSESELENOMETHIONINE F - 392
1riq_A_3801riq   A     MSESELENOMETHIONINE I - 400

Clusters included in this Subclass
CLUSTER: HH.4.228
CLUSTER: HH.6.37