ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.3.10

Subclass Accession number: 2723
Subclass: 1.3.10

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 8

Average sequence ID (%) : 14.3 +/- 14.0
Average RMSD (Å) : 0.550 +/- 0.169

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XhGpX
(φψ)-conformation:	bbeaa

Pattern:	[FILVY]	[AFGKLV]	[agst]	x	[GS]	[drsty]	[egst]	[CGIVY]	x	x	x	x	[ekst]	[ailvw]	[afgil]
Conservation:	0.816	-0.574	0.236	-0.488	3.283	-0.500	-0.031	-0.443	-0.751	-0.510	0.105	-0.428	0.206	-0.452	-0.471

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f0x_A_390	1f0x	A	394	408	LKMAGDGVGEAKSWL	EEE-TTHHHHHHHHH	xxbbeaaaaaaaaaa
1g0u_J_124	1g0u	J	124	138	YGAHGYSGFYTFSLL	EEE-TTHHHHHHHHH	bbbbeaaaaaaaaaa
1gpu_A_557	1gpu	A	559	573	LVATGSEVSLSVEAA	EEE-THHHHHHHHHH	bbbbeaaaaaaaaaa
1j5x_A_42	1j5x	A	45	59	FVGCGSSYNLALTIS	EEESTHHHHHHHHHH	bbbbeaaaaaaaaaa
1kek_A_271	1kek	A	273	287	IVSMGSSCETIEEVI	EEE-STHHHHHHHHH	xbbbeaaaaaaaaaa
1o7q_A_129	1o7q	A	133	147	VFAVGRYIEHYLEEF	EEE-TTHHHHHHHHH	bbbbeaaaaaaaaaa
1qs0_B_224	1qs0	B	225	239	VLTYGTTVYVAQVAA	EEE-TTHHHHHHHHH	bxbbeaaaaaaaaaa
1r1d_A_87	1r1d	A	89	103	VAGLSLGGVFSLKLG	EEE-THHHHHHHHHH	bbbbeaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	C - 48
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	S - 50
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	S - 51
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	L - 54
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	T - 57
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	I - 58
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	Y - 60
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	Y - 61
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	F - 62
1j5x_A_42	1j5x	A	MSESELENOMETHIONINE	V - 65
1o7q_A_129	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	V - 133
1o7q_A_129	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	F - 134
1o7q_A_129	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	A - 135
1o7q_A_129	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	V - 136
1o7q_A_129	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	G - 137
1o7q_A_129	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	R - 138
1o7q_A_129	1o7q	A	MNMANGANESE (II) ION	Y - 139
1o7q_A_129	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	Y - 139
1o7q_A_129	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	I - 140
1o7q_A_129	1o7q	A	GOLGLYCEROL	E - 141
1o7q_A_129	1o7q	A	GOLGLYCEROL	H - 142
1o7q_A_129	1o7q	A	GOLGLYCEROL	Y - 143
1o7q_A_129	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	Y - 143
1o7q_A_129	1o7q	A	GOLGLYCEROL	E - 146
1qs0_B_224	1qs0	B	MSESELENOMETHIONINE	Y - 228
1qs0_B_224	1qs0	B	MSESELENOMETHIONINE	G - 229
1qs0_B_224	1qs0	B	MSESELENOMETHIONINE	T - 230
1r1d_A_87	1r1d	A	MSESELENOMETHIONINE	A - 90
1r1d_A_87	1r1d	A	MSESELENOMETHIONINE	G - 91
1r1d_A_87	1r1d	A	MSESELENOMETHIONINE	L - 92
1r1d_A_87	1r1d	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	L - 92
1r1d_A_87	1r1d	A	MSESELENOMETHIONINE	S - 93
1r1d_A_87	1r1d	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	S - 93
1r1d_A_87	1r1d	A	MSESELENOMETHIONINE	L - 94
1r1d_A_87	1r1d	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	L - 94
1r1d_A_87	1r1d	A	MSESELENOMETHIONINE	G - 96
1r1d_A_87	1r1d	A	MSESELENOMETHIONINE	V - 97
1r1d_A_87	1r1d	A	MSESELENOMETHIONINE	L - 100
1r1d_A_87	1r1d	A	MSESELENOMETHIONINE	L - 102

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o7q_A_129	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	F - 134
1o7q_A_129	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	A - 135
1o7q_A_129	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	Y - 139
1o7q_A_129	1o7q	A	AC1GOL BINDING SITE FOR CHAIN A	H - 142
1o7q_A_129	1o7q	A	AC1GOL BINDING SITE FOR CHAIN A	Y - 143
1o7q_A_129	1o7q	A	AC1GOL BINDING SITE FOR CHAIN A	E - 146

Clusters included in this Subclass

CLUSTER: EH.2.166

CLUSTER: EH.3.106

CLUSTER: EH.4.271