ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.23.1

Subclass Accession number: 2997
Subclass: 3.23.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 33.5 +/- 23.6
Average RMSD (Å) : 0.580 +/- 0.363

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hhSGGhD
(φψ)-conformation:	pbagpaa

Pattern:	[AGIV]	[ILV]	[AGIP]	[FHIL]	[HS]	[G]	[G]	[alv]	[DG]	[ST]	[ST]	[alv]	[ATV]	[AGLT]	[alm]	[lw]	[ALM]
Conservation:	-0.796	0.433	-1.003	-0.592	0.214	2.226	2.226	-0.752	0.680	0.457	0.450	-0.859	-0.236	-0.769	-0.695	-0.687	-0.297

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gpm_A_229	1gpm	A	231	247	ILGLSGGVDSSVTAMLL	EEE--SSHHHHHHHHHH	bbxxavxaaaaaaaaaa
1iir_A_304	1iir	A	304	320	AVIHHGGAGTTHVAARA	EEEE---HHHHHHHHHH	bbbbavxaaaaaaaaaa
1k92_A_12	1k92	A	14	30	GIAFSGGLDTSAALLWM	EEE--SSHHHHHHHHHH	xbxxagxaaaaaaaaaa
1kqp_A_40	1kqp	A	42	58	VLGISGGQDSTLAGRLA	EEE--SSHHHHHHHHHH	bbxbavxaaaaaaaaaa
1q15_A_240	1q15	A	242	258	GIPLSGGLDSSLVTALA	EEE--SSHHHHHHHHHH	xbwbavxaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	L - 232
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	G - 233
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	G - 233
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	L - 234
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	S - 235
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	S - 235
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	G - 236
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	G - 237
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	V - 238
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	D - 239
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	D - 239
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	S - 240
1gpm_A_229	1gpm	A	AMPADENOSINE MONOPHOSPHATE	S - 240
1gpm_A_229	1gpm	A	POPPYROPHOSPHATE 2-	S - 241
1k92_A_12	1k92	A	CRYPROPANE-1,2,3-TRIOL	Q - 32
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	L - 43
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 44
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	I - 45
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	I - 45
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	S - 46
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	S - 46
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	S - 46
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 47
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	G - 47
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	G - 48
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 48
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	G - 48
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	Q - 49
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	Q - 49
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	D - 50
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	D - 50
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	D - 50
1kqp_A_40	1kqp	A	MGMAGNESIUM ION	S - 51
1kqp_A_40	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	S - 51
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	S - 51
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	T - 52
1kqp_A_40	1kqp	A	POPPYROPHOSPHATE 2-	L - 53

Clusters included in this Subclass

CLUSTER: EH.4.152