ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.9.1

Subclass Accession number: 4006
Subclass: 5.9.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 13

Average sequence ID (%) : 28.3 +/- 24.4
Average RMSD (Å) : 0.769 +/- 0.345

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hXcLXhhXX
(φψ)-conformation:	bblppplbp

Pattern:	x	[afilvy]	x	[agilv]	[aegqst]	[dgn]	x	x	[aept]	x	x	x	[y]	x	[fimvy]	[agkrst]	x	x	[acs]	x
Conservation:	-0.263	0.048	-0.423	-0.039	-0.281	0.633	0.307	-0.770	0.325	-0.483	-0.296	-0.509	3.698	-0.993	0.351	-0.385	0.022	-0.746	0.733	-0.931

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bqu_A_165	1bqu	A	165	184	SFTVQDLKPFTEYVFRIRCM	EEEE-S--SSEEEEEEEEEE	bbxxbvxxxlbxbbbbbbbb
1cfb_*_774	1cfb	-	774	793	NIVIADQPTFVKYLIKVVAI	EEEE-S--SS-EEEEEEEEE	bbbbblbxxlbxbbbbbbxb
1fna_*_56	1fna	-	56	75	TATISGLKPGVDYTITVYAV	EEEE-S--TT-EEEEEEEEE	bbxbbvxbxlbxbbbbbbbb
1fnf_*_1291	1fnf	-	1291	1310	AVVLTNLLPGTEYVVSVSSV	EEEE-S--TT-EEEEEEEEE	bbbxblxxxlbxbbbbbbxb
1fnf_*_1381	1fnf	-	1381	1400	SITLTNLTPGTEYVVSIVAL	EEEEES--TT-EEEEEEEEE	bbbxbvxxplbxbxbbbbxb
1fnf_*_1471	1fnf	-	1471	1490	TATISGLKPGVDYTITVYAV	EEEE-S--TT--EEEEEEEE	bbbbxvxbxvbxbxbbbbxx
1i1r_A_261	1i1r	A	261	280	SFTVQDLKPFTEYVFRIRCM	EEEE-S--TT-EEEEEEEEE	bbbxblxxxlbxbbbbbbbb
1j48_A_17	1j48	A	19	38	SVSVSGAAAGETYYIAQCAP	EEEEESS-TT-EEEEEEEEE	bbbbbvxxxlbxbbbbxbbw
1noa_*_18	1noa	-	20	39	KVAGAGLQAGTAYDVGQCAW	EEEEES--TT-EEEEEEEEE	xbbbbvxxpvbxbxbbbbbx
1qg3_A_1180	1qg3	A	1180	1199	SVELTNLYPYCDYEMKVCAY	EEEE-S--TT-EEEEEEEEE	bbbxblxxxlbxbbbbbbbb
1qg3_A_1282	1qg3	A	1282	1301	MLLIENLRESQPYRYTVKAR	EEEE----TT--EEEEEEEE	bbxbbvxxplbxbbbbbbbb
1ten_*_857	1ten	-	857	876	QYSIGNLKPDTEYEVSLISR	EEEE-S--TT-EEEEEEEEE	bbbbblxxxlbxbbbbbbxb
2mcm_*_16	2mcm	-	19	38	TVSATGLTPGTVYHVGQCAV	EEEEES--TT-EEEEEEEEE	bbbbbvxxpvxxbxxbbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1qg3_A_1282	1qg3	A	CACCACODYLATE ION	N - 1287
1qg3_A_1282	1qg3	A	CACCACODYLATE ION	L - 1288
1qg3_A_1282	1qg3	A	CACCACODYLATE ION	R - 1289
1qg3_A_1282	1qg3	A	CACCACODYLATE ION	Y - 1294
2mcm_*_16	2mcm	*	MPD2-METHYL-2,4-PENTANEDIOL	T - 17
2mcm_*_16	2mcm	*	MPD2-METHYL-2,4-PENTANEDIOL	H - 32
2mcm_*_16	2mcm	*	MPD2-METHYL-2,4-PENTANEDIOL	V - 33
2mcm_*_16	2mcm	*	MPD2-METHYL-2,4-PENTANEDIOL	G - 34
2mcm_*_16	2mcm	*	MPD2-METHYL-2,4-PENTANEDIOL	Q - 35
2mcm_*_16	2mcm	*	MPD2-METHYL-2,4-PENTANEDIOL	C - 36
2mcm_*_16	2mcm	*	MPD2-METHYL-2,4-PENTANEDIOL	A - 37
2mcm_*_16	2mcm	*	MPD2-METHYL-2,4-PENTANEDIOL	V - 38
2mcm_*_16	2mcm	*	CACALCIUM ION	E - 40

Clusters included in this Subclass

CLUSTER: AR.6.103

CLUSTER: AR.6.193

CLUSTER: AR.7.23

CLUSTER: AR.7.42