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Information on SUBCLASS 5.54.1
Subclass Accession number: 4058
Subclass: 5.54.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51181 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 9.5 +/- 18.2
Average RMSD (Å) : 1.133 +/- 0.208

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXXpppXXX
(φψ)-conformation: bbababpbb
Pattern: xx[ILV][LMV]xx[GKT][HS][HRT][NT]xxx[DS]
Conservation:-1.193-0.7711.1290.812-0.771-0.982-0.7711.733-0.1381.530-0.560-0.557-0.3490.888
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1erj_A_6641erj   A664677PLLMLQGHRNSVISEEEEEE--SS-EEExabbbbababpxab
1od5_A_4291od5   A440453EYVVFKTHHNAVSSEEEEEESSTT--EEbbbbxbababxbbb
1su4_A_1621su4   A163176IRILSIKSTTLRVDEEEEEE-SS--EEEbxxabxaxabbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1od5_A_4291od5   A     MGMAGNESIUM ION V - 430
1od5_A_4291od5   A     MGMAGNESIUM ION E - 432
1od5_A_4291od5   A     MGMAGNESIUM ION Y - 441
1od5_A_4291od5   A     MGMAGNESIUM ION V - 443
1od5_A_4291od5   A     MGMAGNESIUM ION K - 445
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od5_A_4291od5   A AC4MG BINDING SITE FOR CHAIN BE - 432
1od5_A_4291od5   A AC4MG BINDING SITE FOR CHAIN BY - 441

Clusters included in this Subclass
CLUSTER: AR.5.234