ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.3.1

Subclass Accession number: 4088
Subclass: 6.3.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 66.4 +/- 25.0
Average RMSD (Å) : 0.382 +/- 0.125

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	VXXGpEQpYT
(φψ)-conformation:	bppgaaaabb

Pattern:	[FY]	[HQ]	[AKT]	[W]	[ASV]	[as]	[LTV]	x	[IV]	[KPR]	x	[G]	[DEKQ]	[E]	[HQ]	[HKNRY]	[FY]	[QT]	[C]	[HQRY]	[MV]	[EHNQY]
Conservation:	0.598	-0.018	-0.724	2.855	-0.666	-0.739	-0.583	-1.040	0.145	-0.529	-1.055	1.030	-0.396	0.665	-0.018	-0.758	0.739	-0.291	2.125	-0.504	-0.132	-0.701

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1i4f_A_241	1i4f	A	241	262	FQKWAAVVVPSGQEQRYTCHVQ	EEEEEEEEEETT-GGGEEEEEE	bbbbbbbxbxpvaaaaxbbbbb
1je6_A_241	1je6	A	241	262	YQTWVATRIRQGEEQRFTCYME	EEEEEEEEEETT-GGGEEEEEE	bbbbbbbxbxpgaaaaxbbxbb
1juf_A_241	1juf	A	241	262	FQKWASVVVPLGKEQNYTCRVY	EEEEEEEEEETT--TTEEEEEE	bbbbbbbxbppgaaaabbbbbb
1k5n_A_241	1k5n	A	241	262	FQKWAAVVVPSGEEQRYTCHVQ	EEEEEEEEEETT-GGGEEEEEE	bbbbbbbxbxpvaaaaxbbbbb
1k8d_A_241	1k8d	A	241	262	FQKWASVVVPLGKEQNYTCHVN	EEEEEEEEEETT-STTEEEEEE	bbbbbbbxbxpgaaaaxbbbxb
1kjv_A_241	1kjv	A	241	262	FQKWASVVVPLGKEQNYTCRVE	EEEEEEEEE-TT-GGGEEEEEE	bbbbbbbbbxxgaaaaxbbbbb
1lk2_A_241	1lk2	A	241	262	FQKWASVVVPLGKEQYYTCHVY	EEEEEEEEEETT-GGGEEEEEE	bbbbbbbbbxpvaaaabbxbbb
1mhc_A_241	1mhc	A	241	262	FQKWAAVVVPSGEEQRYTCYVH	EEEEEEEEE-TT-GGGEEEEEE	bbbbbbbbbxpgaaaaxbbbbb
1nez_A_241	1nez	A	241	262	FQKWAAVVVPSGEEQKYTCHVY	EEEEEEEEE-TT-GGGEEEEEE	bbbbbbbxbxpvaaaaxbbbbb
1qo3_A_241	1qo3	A	241	262	FQKWASVVVPLGKEQKYTCHVE	EEEEEEEEE-TT-GGGEEEEEE	bbbbbbbxbxpgaaaaxbbbbb
3fru_A_236	3fru	A	236	257	FHAWSLLEVKRGDEHHYQCQVE	EEEEEEEEEETT-GGGEEEEEE	bbbbbbbxbxpgaaaaxbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1k5n_A_241	1k5n	A	GOLGLYCEROL	F - 241
1lk2_A_241	1lk2	A	MPD2-METHYL-2,4-PENTANEDIOL	Q - 242
1qo3_A_241	1qo3	A	EDO1,2-ETHANEDIOL	Q - 242
3fru_A_236	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 241
3fru_A_236	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 242
3fru_A_236	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 243
3fru_A_236	3fru	A	MANALPHA-D-MANNOSE	E - 243
3fru_A_236	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 244
3fru_A_236	3fru	A	MANALPHA-D-MANNOSE	V - 244
3fru_A_236	3fru	A	MANALPHA-D-MANNOSE	K - 245
3fru_A_236	3fru	A	MANALPHA-D-MANNOSE	D - 248
3fru_A_236	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 252
3fru_A_236	3fru	A	MANALPHA-D-MANNOSE	Y - 252

Clusters included in this Subclass

CLUSTER: AR.6.24