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Information on SUBCLASS 2.1.13
Subclass Accession number: 5333
Subclass: 2.1.13 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 17.4 +/- 16.1
Average RMSD (Å) : 0.686 +/- 0.219

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXGhXX
(φψ)-conformation: aalpbb
Pattern: [CGPS]xx[adrst][flmv][CLMW]x[EHKNQY][GIKLV][GILMV][kps][ekrt]x[G][IVW][afktv]x
Conservation:-0.083-0.504-0.471-0.690-0.1010.320-0.2730.034-0.7010.1080.077-0.073-0.5503.5260.785-0.713-0.690
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cl1_A_1121cl1   A113129PSQDFCSKILSKLGVTTHHHHHHHHTGGGGT-EEaaaaaaaaaaaaavbbb
1f9v_A_4911f9v   A497513SHIFNWINKLKTKGWDYHHHHHHHHHHGGGT-EEaaaaaaaaaaaaavxbb
1gc0_A_1161gc0   A116132CTFAFLHHGIGEFGVKLHHHHHHHHTGGGGT-EEaaaaaaaaFaaaavxxb
1ibj_A_1821ibj   A183199GSDRLLSQVVPRSGVVVHHHHHHHHTSGGGT-EEaaaaaaaaaaaaavxxb
1j3b_A_1931j3b   A198214SIFTVMNYLMPKRGVFPHHHHHHHHHGGGGT-EEaaaaaaaaaaaaavbxw
1os1_A_2091os1   A214230GMFSMMNYLLPLKGIASHHHHHHHHHTGGGT-EEaaaaaaaaaaaaavbxb
1ro2_A_2211ro2   A223239SLLRFLAEKGKRLGITLHHHHHHHHHHGGGT-EEaaaaaaaaaaaaavxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cl1_A_1121cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 114
1gc0_A_1161gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) C - 116
1gc0_A_1161gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 117
1ibj_A_1821ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 184
1j3b_A_1931j3b   A     PO4PHOSPHATE ION G - 211
1os1_A_2091os1   A     PYRPYRUVIC ACID G - 209
1os1_A_2091os1   A     PYRPYRUVIC ACID E - 210
1os1_A_2091os1   A     CACALCIUM ION K - 212
1os1_A_2091os1   A     PYRPYRUVIC ACID K - 212
1os1_A_2091os1   A     CACALCIUM ION K - 213
1os1_A_2091os1   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 213
1os1_A_2091os1   A     PYRPYRUVIC ACID K - 213

Clusters included in this Subclass
CLUSTER: HE.5.316
CLUSTER: HE.6.174
CLUSTER: HE.6.255
CLUSTER: HE.7.88