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Information on SUBCLASS 2.1.18
Subclass Accession number: 5338
Subclass: 2.1.18 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 12.7 +/- 14.5
Average RMSD (Å) : 0.625 +/- 0.126

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: PXXhpX
(φψ)-conformation: aalpbb
Pattern: [DEGR]xxxx[IVY]x[DR]x[IL]x[PT]xx[AVW][DHKT]x
Conservation:-0.266-0.717-0.830-0.999-0.0950.892-0.6040.657-0.9431.956-0.3792.468-0.8870.425-0.255-0.379-0.044
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ag9_A_1001ag9   A100116DALGTIRDIIEPRGATIHHHHHHHHHHTTTT-EEaaaaaaaaaaaaavxbx
1dfm_A_501dfm   A5268GTNQYIKDELVPKHWKNHHHHHHHHHHGGGT-EEaaaaaaaaaaaaavxxb
1h70_A_281h70   A3349EQHNAYIRALQTCDVDIHHHHHHHHHHTTSS-EEaaaaaaaaaaaaalbxb
2nac_A_2012nac   A201217RIGLAVLRRLAPFDVHLHHHHHHHHHHGGGT-EEaaaaaaaaaaaaavxxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ag9_A_1001ag9   A     FMNFLAVIN MONONUCLEOTIDE D - 100
1dfm_A_501dfm   A     MSESELENOMETHIONINE G - 52
1dfm_A_501dfm   A     MSESELENOMETHIONINE T - 53
1dfm_A_501dfm   A     CACALCIUM ION N - 54
1dfm_A_501dfm   A     MSESELENOMETHIONINE Y - 56
1dfm_A_501dfm   A     CACALCIUM ION Y - 56
1dfm_A_501dfm   A     MSESELENOMETHIONINE I - 57
1dfm_A_501dfm   A     MSESELENOMETHIONINE P - 71

Clusters included in this Subclass
CLUSTER: HE.5.221