Information on SUBCLASS 2.5.5 |
Subclass Accession number: 5407
Subclass: 2.5.5 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 18.8 +/- 18.2 Average RMSD (Å) : 0.820 +/- 0.217 Consensus geometry
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Consensus Sequence: | ppGhph |
(φψ)-conformation: | aagppb |
Pattern: | x | x | [aer] | [AGMT] | x | [AGKN] | [ikv] | [LY] | [ARST] | [ADENS] | [rs] | [G] | [al] | [KNPQ] | [ITVY] | x | [asv] |
Conservation: | -0.516 | -1.026 | -0.509 | -0.436 | -0.608 | -0.202 | -0.498 | 0.916 | 0.140 | -0.013 | -0.211 | 3.505 | -0.032 | 0.145 | 0.084 | -0.576 | -0.162 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1euc_B_361 | 1euc | B | 361 | 377 | VHEAQNILTNSGLPITS | HHHHHHHHHTT-SSEEE | aaaaaaaaaaavxxbbx |
1hdo_A_126 | 1hdo | A | 132 | 148 | HIRMHKVLRESGLKYVA | HHHHHHHHHHT-SEEEE | aaaaaaaaaaavxxbbx |
1q74_A_16 | 1q74 | A | 21 | 37 | NGATIAHYTSRGAQVHV | HHHHHHHHHHTT-EEEE | aaaaaaaaaaavxxbbb |
2scu_B_354 | 2scu | B | 354 | 370 | AELGAKKLADSGLNIIA | HHHHHHHHHHT-SSEEE | aaaaaaaaaaagxxbbx |
3grs_*_197 | 3grs | - | 199 | 215 | AVEMAGILSALGSKTSL | HHHHHHHHHHTT-EEEE | aaaaaaaaaaagxxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1euc_B_361 | 1euc | B | CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE | V - 361 |
1euc_B_361 | 1euc | B | CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE | A - 364 |
1euc_B_361 | 1euc | B | CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE | I - 367 |
1hdo_A_126 | 1hdo | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | V - 128 |
1hdo_A_126 | 1hdo | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | H - 132 |
1q74_A_16 | 1q74 | A | ZNZINC ION | D - 16 |
3grs_*_197 | 3grs | * | FADFLAVIN-ADENINE DINUCLEOTIDE | Y - 197 |
3grs_*_197 | 3grs | * | FADFLAVIN-ADENINE DINUCLEOTIDE | I - 198 |
3grs_*_197 | 3grs | * | FADFLAVIN-ADENINE DINUCLEOTIDE | E - 201 |
3grs_*_197 | 3grs | * | FADFLAVIN-ADENINE DINUCLEOTIDE | M - 202 |
Clusters included in this Subclass |
CLUSTER: HE.4.180 |