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PDB code:

Information on SUBCLASS 3.17.1

Subclass Accession number: 5556 Subclass: 3.17.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 14 Average sequence ID (%) : 31.6 +/- 24.9 Average RMSD (Å) : 0.371 +/- 0.091 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a5z_*_248	1a5z	-	250	274	IALAVADIVESIFFDEKRVLTLSVY	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalavxxbxxxbx
1ez4_A_249	1ez4	A	251	275	IGTALMRISKAILRDENAVLPVGAY	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalalxxbxbxbx
1gv0_A_226	1gv0	A	228	252	PATSVVEMVESIVLDRKRVLTCAVS	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalalxbbxbxbx
1hye_A_232	1hye	A	232	256	PAAAILNVVRCIVNNEKRLLTLSAY	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalavxbxbbxbx
1hyh_A_250	1hyh	A	252	276	VATSAIRIAKAVMADAHAELVVSNR	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalavxxbxbxbx
1i0z_A_250	1i0z	A	252	276	IGLSVADLIESMLKNLSRIHPVSTM	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalalxxbxbxbx
1ldn_A_249	1ldn	A	251	275	IAMGLARVTRAILHNENAILTVSAY	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalavxbbxbxbx
1lld_A_238	1lld	A	240	264	IGMSGVDIIEAVLHDTNRILPVSSM	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalavxbbxbxbx
1oc4_A_248	1oc4	A	250	274	PAAAIIEMAESYIRDLRKVLICSTL	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalavxxbxbxbx
1pze_A_248	1pze	A	250	274	PAASAVAMATSFLNDEKRVIPCSVY	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalavxbbxbxbx
1t2d_A_236	1t2d	A	238	262	PAAAIIEMAESYLKDLKKVLICSTL	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalavxxbxbxbx
1ur5_A_227	1ur5	A	229	253	PAAATAQMVEAVLKDKKRVMPVAAY	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalalxbbxbxbx
6ldh_*_247	6ldh	-	249	273	IGLSVADLAETIMKNLCRVHPVSTM	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalavxxbxbxbx
9ldt_A_248	9ldt	A	250	274	IGLSVADLAESIMKNLRRVHPISTM	HHHHHHHHHHHHHTT--EEEEEEEE	aaaaaaaaaaaaaalalxxbxbxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a5z_*_248	1a5z	*	OXMOXAMIC ACID	I - 250
1a5z_*_248	1a5z	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 250
1a5z_*_248	1a5z	*	CDCADMIUM ION	E - 259
1a5z_*_248	1a5z	*	CDCADMIUM ION	F - 263
1a5z_*_248	1a5z	*	CDCADMIUM ION	E - 265
1a5z_*_248	1a5z	*	CDCADMIUM ION	R - 267
1ez4_A_249	1ez4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 251
1gv0_A_226	1gv0	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	P - 228
1hye_A_232	1hye	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	P - 232
1hyh_A_250	1hyh	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 252
1i0z_A_250	1i0z	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	I - 252
1i0z_A_250	1i0z	A	OXMOXAMIC ACID	I - 252
1ldn_A_249	1ldn	A	OXMOXAMIC ACID	I - 251
1ldn_A_249	1ldn	A	FBPFRUCTOSE-1,6-DIPHOSPHATE	I - 269
1ldn_A_249	1ldn	A	FBPFRUCTOSE-1,6-DIPHOSPHATE	L - 270
1lld_A_238	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 240
1oc4_A_248	1oc4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	P - 250
1oc4_A_248	1oc4	A	OXMOXAMIC ACID	P - 250
1oc4_A_248	1oc4	A	GOLGLYCEROL	K - 267
1oc4_A_248	1oc4	A	GOLGLYCEROL	V - 268
1oc4_A_248	1oc4	A	GOLGLYCEROL	L - 269
1oc4_A_248	1oc4	A	GOLGLYCEROL	I - 270
1t2d_A_236	1t2d	A	OXLOXALATE ION	P - 238
1t2d_A_236	1t2d	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	P - 238
1t2d_A_236	1t2d	A	GOLGLYCEROL	K - 255
1t2d_A_236	1t2d	A	GOLGLYCEROL	V - 256
1t2d_A_236	1t2d	A	GOLGLYCEROL	L - 257
1t2d_A_236	1t2d	A	GOLGLYCEROL	I - 258
1ur5_A_227	1ur5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	P - 229
1ur5_A_227	1ur5	A	CDCADMIUM ION	E - 238
1ur5_A_227	1ur5	A	CDCADMIUM ION	K - 244
1ur5_A_227	1ur5	A	CDCADMIUM ION	R - 246

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gv0_A_226	1gv0	A	NAANAD BINDING SITE FOR CHAIN A	P - 228
1oc4_A_248	1oc4	A	AC5GOL BINDING SITE FOR CHAIN A	I - 270
1ur5_A_227	1ur5	A	AC7CD BINDING SITE FOR CHAIN A	D - 243

Clusters included in this Subclass

CLUSTER: HE.3.58

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