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Information on SUBCLASS 6.39.1
Subclass Accession number: 5904
Subclass: 6.39.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003676 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 0.0 +/- 0.0
Average RMSD (Å) : 1.400 +/- 0.346

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XppXpXXpXX
(φψ)-conformation: aababbpabb
Pattern: x[AQS]xxx[HSY][NQR]x[DHR][CRY]x[NST]x[NTV]
Conservation:-0.2700.630-0.450-0.630-1.1701.3501.529-0.6300.630-0.450-1.3501.709-0.810-0.090
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dbq_A_2231dbq   A230243MQQILSQPHRPTAVHHHHHTSSS--SEEaaaaaaxabbxabb
1dyt_A_281dyt   A2841RAINNYRWRCKNQNHHHHTTSSS--SEEaaaaaababxxabb
1o6z_A_1091o6z   A125138SSLDEHNDDYISLTHHHHTT-S--EEEEaaaaaababbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dyt_A_281dyt   A     FEFE (III) ION R - 34
1dyt_A_281dyt   A     CITCITRIC ACID R - 34
1dyt_A_281dyt   A     FEFE (III) ION R - 36
1dyt_A_281dyt   A     CITCITRIC ACID R - 36
1dyt_A_281dyt   A     FEFE (III) ION C - 37
1dyt_A_281dyt   A     CITCITRIC ACID C - 37
1dyt_A_281dyt   A     CITCITRIC ACID K - 38
1dyt_A_281dyt   A     FEFE (III) ION N - 39
1dyt_A_281dyt   A     CITCITRIC ACID N - 39
1dyt_A_281dyt   A     CITCITRIC ACID Q - 40
1dyt_A_281dyt   A     CITCITRIC ACID N - 41
1dyt_A_281dyt   A     CITCITRIC ACID L - 44
1o6z_A_1091o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 119
1o6z_A_1091o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 122
1o6z_A_1091o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 123
1o6z_A_1091o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 138
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1dyt_A_281dyt   A ASAPOTENTIAL ACTIVE SITE CHAIN AK - 38

Clusters included in this Subclass
CLUSTER: HE.7.168